Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2476 ATGCTGTCTAAAGTGCAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACTGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGCCCACGGTGCTTGGACACGCATGTGGCGGTTGGTTTCGCGCTAGATATTGCTCGTGCTATGGAATGCCTGCACTCTCATGGCATCATACACCGTGATCTGAAACCAGAGAACCTACTGTTGACTGCTGATCATAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACAGAGATGATGACAGCGGAGACGGGGACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTGTTATGGGAACTTCTACACAACAAGCTGCCATTTGAAGGCATGTCAAATCTTCAGGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCTAGCGCAGATAACCTTCCGGATGAACTAGCCATCATACTAACATCATGCTGGCAAGAGGATGCAAATGCTCGTCCAAACTTCACCCAAATTATCCAAACACTACTCAATTACCTTTACACCATTGCTCCACCCGAGCCCATGATTCCTTCCCGAGTCTTCACTTCTGAGAATGCCGTGTTTCCTCCCGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGATGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAAGTTCAGAGGTTGTTTTTTCTGCACCAATGACTGTTACTAA 831 45.61 MLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTHVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSADNLPDELAIILTSCWQEDANARPNFTQIIQTLLNYLYTIAPPEPMIPSRVFTSENAVFPPESPGTSSLMAVRDDSGDTPKAKMENKFRGCFFCTNDCY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34347505 34351235 + Sed0027372.2 Sed12g2476 733432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2476 276 Pfam Protein tyrosine and serine/threonine kinase 1 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 Gene3D Transferase(Phosphotransferase) domain 1 1 220 - -
Sed12g2476 276 PANTHER SERINE-THREONINE PROTEIN KINASE 1 211 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed12g2476 276 CDD STKc_MAP3K-like 1 210 - -
Sed12g2476 276 SUPERFAMILY Protein kinase-like (PK-like) 1 238 IPR011009 -
Sed12g2476 276 SMART serkin_6 1 211 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 PRINTS Tyrosine kinase catalytic domain signature 26 39 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 PRINTS Tyrosine kinase catalytic domain signature 64 82 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 PRINTS Tyrosine kinase catalytic domain signature 138 160 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 PRINTS Tyrosine kinase catalytic domain signature 181 203 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2476 276 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2476 Sed-Chr12:34347505 Sed14g1314 Sed-Chr14:22010268 3.80E-46 dispersed
Sed12g2475 Sed-Chr12:34347505 Sed12g2476 Sed-Chr12:34347505 1.30E-160 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80056 PF07714 PK_Tyr_Ser-Thr 5.00E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2476 - - - 0.0