Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g2482 | ATGGAGAATCTTGATCTTCTTCTCCAATTAGTTTCCTTCACTGGTTTCATCCTGTTCATCATCCTCCTCCTCCAAAAATGGGTATTCCCTAATCCAAGGTCCCAAACACCCCCATCTCCACCCAAGCTCCCAATCTTTGGTCACCTCCTAAGCCTAGGCACCCACCCCCACACCACTCTCCAAACATACTCCTTAAAGTATGGCCCCATGTTCCTCCTGCACCTCGGCTCGAACCCGACCCTCATCATCTCCTCCCCCCAAACAGCCCGCCAAATCACCAAAACCCACGACCTCACCTTCTCAAACAGACCCAAGTCCGCCATGTTCGACAAGCTCCTCTACAACTCCAGAGACATCTCCGCCAGCCCCTACGGCGAGTACTGGAGGCAAATGAAGAGCATCGCTGTTCTTCATTTGCTAAGCAACAAAAGGGTTCAATCGTTTCGAGGAGTTAGAGAAGAAGAAGTGGGAATTATGGTGGACCGCATTCGTAGCCGGGATCGGGATACCCCGGTGAACTTGACCGAGGAGGTTTCCGGGCTGGCAAACGACATCGTGTGTCGGGTGGCGTTGGGGAGGAAGTATGGGAGGAGGGGGTTTAGGGAGGTCTTGTTGGAGTTTGGGGGGTTGTTGGGGAGTTTTTGTGTTGGGGACTTTGTTCCTTGGTTGGGTTGGGTGGATTGGGTTTGTGGGTTGGAGAACAAAGCAAACAAAGTGGCTAAGCAACTTGATGGGTTGATTGAGGAAGTGATTCAAGATCATGGGGATGGGAGTATGGAGTGTAGGGATTTTGTTGATATTCTTCTTTTCATTAAAAAGGAGAATTCTGTTGGCTTTCCTGTTGAGATGGAGAGCATCAAAGCTGTCATCTTGGACATGTTTGCAGCAGGAACAGACACGACATACACAGTAATAGAATGGGCAATGTCAGAATTAATAAAGCACCCGGAAACAATGAAGAAACTACGAACCGAAATCAAAGAAATAGTACAAAACAAAGCATACGTGAACGAGGATGATTTAGAACAAATGCATTACTTAAAAGCAACCATCAAAGAAACATTGCGACTGCACCCACCGATCCCACTTCTGGTGCCTAGAGAATCTACCGAGTTCATAAAGCTAAATGGATATGATATCAAGGCAGGCACCCGAGTGATAATCAACGCATGGGCCATAGGCAGAGATCCCGAATCGTGGGCCGAACCGGAGGAGTTTAAGCCGGAGAGGTTTATGAACAGTTCGATAGATTTTAAGGGTCAGAACTTTGAGCTGATCCCATTTGGTGCAGGGAGAAGAGGCTGCCCTGGAATTATGTTTGCAATTATGGTTAATGAGTTGGCTCTGGCGAATTTGGTGCATAGTTTTGAGTGGGCGTTGCCAAATGGAGCAAAGGCTGAGGATTTGGATATGTCTGAAGCTGTTGGGTTAAACATTCATAGGAAATTCCCACTTGTGGCTGTGCCAACTCCTTGCTAG | 1479 | 47.8 | MENLDLLLQLVSFTGFILFIILLLQKWVFPNPRSQTPPSPPKLPIFGHLLSLGTHPHTTLQTYSLKYGPMFLLHLGSNPTLIISSPQTARQITKTHDLTFSNRPKSAMFDKLLYNSRDISASPYGEYWRQMKSIAVLHLLSNKRVQSFRGVREEEVGIMVDRIRSRDRDTPVNLTEEVSGLANDIVCRVALGRKYGRRGFREVLLEFGGLLGSFCVGDFVPWLGWVDWVCGLENKANKVAKQLDGLIEEVIQDHGDGSMECRDFVDILLFIKKENSVGFPVEMESIKAVILDMFAAGTDTTYTVIEWAMSELIKHPETMKKLRTEIKEIVQNKAYVNEDDLEQMHYLKATIKETLRLHPPIPLLVPRESTEFIKLNGYDIKAGTRVIINAWAIGRDPESWAEPEEFKPERFMNSSIDFKGQNFELIPFGAGRRGCPGIMFAIMVNELALANLVHSFEWALPNGAKAEDLDMSEAVGLNIHRKFPLVAVPTPC | 492 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 34390751 | 34398578 | + | Sed0016920.1 | Sed12g2482 | 733438 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g2482 | 492 | Pfam | Cytochrome P450 | 37 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | SUPERFAMILY | Cytochrome P450 | 37 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | CDD | CYP71-like | 66 | 485 | - | - | |
| Sed12g2482 | 492 | PRINTS | P450 superfamily signature | 296 | 313 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | P450 superfamily signature | 426 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | Gene3D | Cytochrome P450 | 31 | 490 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | FunFam | Cytochrome P450 83B1 | 24 | 488 | - | - | |
| Sed12g2482 | 492 | PANTHER | CYTOCHROME P450 71B11-RELATED | 19 | 490 | IPR050193 | - | |
| Sed12g2482 | 492 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 428 | 437 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 88 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 389 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 348 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 435 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 425 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 305 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 285 | 302 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2482 | 492 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1608 | Sed-Chr1:11703028 | Sed12g2482 | Sed-Chr12:34390751 | 1.70E-47 | dispersed | |
| Sed08g2477 | Sed-Chr8:37679637 | Sed12g2482 | Sed-Chr12:34390751 | 5.20E-118 | dispersed | |
| Sed08g2479 | Sed-Chr8:37711974 | Sed12g2482 | Sed-Chr12:34390751 | 4.30E-120 | dispersed | |
| Sed12g0519 | Sed-Chr12:3141693 | Sed12g2482 | Sed-Chr12:34390751 | 5.90E-18 | dispersed | |
| Sed12g2482 | Sed-Chr12:34390751 | Sed14g0165 | Sed-Chr14:1907843 | 8.80E-110 | dispersed | |
| Sed01g1607 | Sed-Chr1:11686609 | Sed12g2482 | Sed-Chr12:34390751 | 1.80E-126 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g2482 | - | - | - | 0.0 |