Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g2502 | ATGCAACTCAACGTCCCCAATTCCCTCTTCTTCCTTATTTCTCTTTCTTTATGGACTTTCTTTTTTATTCATCTTTCCATCAATAAATTCTTCTACTTCTACGCCAACCGCTTTTCCCCTCCTTCTTACCCTTTCATCGGCTGCTTGATCTCTTTCTACACAAACCGGCACCGCCTTCTGAGCTGGTACACCGACCTACTCTCCCACTCCCCGACTCGAACCATCGTGGTGCAGCGGATTGGTTCGAGGCGCACCGTTGTCACCGCCAACCCGGCTAACGTTGAGTACATGCTCAAGACTAATTTTATTAACTACCCTAAAGGGAAGGCGTTCACTGATATACTCGGCGATCTCCTTGGTTGTGGCATTTTCAACGTCGACGGCGAGTTGTGGTCCACGCAACGCAAGCTCGGTAGCCATGAATTTTCCGCTAATTCTTTGAGGGAATTCGTCGTTAAGACGCTTGAAGACGAGGTTCATCTCCGTTTGATTCCGTTGCTTCTAAACGCTGCTCGGACGAACGGTGTCTTGGATTTGCAAGATGTTCTGGGTCGGCTCGCTTTTGACACCGTTTGTAAGGTAACGCTAGGAACGGACGAACAATGTTTAGACATGTCTCGCCCAGTTCCAGCCATAGTAAACGCATTCGACACGGCTACAAGAATCAGCGCAAGCCGAGCCATAGCGCCACTCTATATGGCTTGGAAAGCCAAGCGCTTGTTCAACATCGGCTCAGAGAAGCGGCTCAAAGAAGCCGTGCAAACGGTCCACACATGGGTCTCCGACATCATTCATAGCAAAACCCTGGACAACATAAACAAACACACCGACTTGTTATCTCGGTTGATGTCCGCTGGGCACGGCGGCGCGATGGTCCGAGACATGGTCGTGAGCTTCATAATGGCCGGGCGTGACACCACCTCCGCCGCCATGACATGGCTCTTCTGGCTGCTTACGAAACACCCCGAAGCCAAACAGACCCTTATGAACGAACTCACTTCCTTGCCCCAAACAGCGTCGTTGGGTTACGGCTACGAGGAACTGAAGGAAATGAAGTATTTGAAGGCGTGTTTGTGTGAGTCCATGCGGCTCTACCCGCCCGTGGCTTGGGATTCCAAGCACGCTGCGGCACCCGACGTTTTGCCCGACGGAACTCCTGTGGGGAAAGGGGATAGAGTCACGTATTTTCCGTATGGAATGGGGCGGATGGAGGAGCTGTGGGGGAAGGACCGGCTTGAGTTTAAACCGGACCGGTGGTTTGAAAACGGGGAATTCAAACCGGTCAGTCCGTTTAAGTTTCCGGTTTTTCAAGCCGGTCCGAGGATGTGCTTGGGAAAGGAAATGGCGTTCATTCAGATGAAATACGTGGTGGCCACGATTTTGAAGCGCTTTGAATTTAGACTTGTGAGTGAAAACCAGCCGGTTTTTATCCCCTTGTTGACAGCTCATATGGCTGGTGGATTGCAAGTTTATGTCACAGACAGAACTCAACAAAACTCAACCTTTAATGAGGATTAA | 1518 | 50.53 | MQLNVPNSLFFLISLSLWTFFFIHLSINKFFYFYANRFSPPSYPFIGCLISFYTNRHRLLSWYTDLLSHSPTRTIVVQRIGSRRTVVTANPANVEYMLKTNFINYPKGKAFTDILGDLLGCGIFNVDGELWSTQRKLGSHEFSANSLREFVVKTLEDEVHLRLIPLLLNAARTNGVLDLQDVLGRLAFDTVCKVTLGTDEQCLDMSRPVPAIVNAFDTATRISASRAIAPLYMAWKAKRLFNIGSEKRLKEAVQTVHTWVSDIIHSKTLDNINKHTDLLSRLMSAGHGGAMVRDMVVSFIMAGRDTTSAAMTWLFWLLTKHPEAKQTLMNELTSLPQTASLGYGYEELKEMKYLKACLCESMRLYPPVAWDSKHAAAPDVLPDGTPVGKGDRVTYFPYGMGRMEELWGKDRLEFKPDRWFENGEFKPVSPFKFPVFQAGPRMCLGKEMAFIQMKYVVATILKRFEFRLVSENQPVFIPLLTAHMAGGLQVYVTDRTQQNSTFNED | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 34536214 | 34538713 | - | Sed0010893.1 | Sed12g2502 | 733458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g2502 | 505 | CDD | CYP86A | 73 | 488 | - | - | |
| Sed12g2502 | 505 | PANTHER | CYTOCHROME P450 | 25 | 488 | - | - | |
| Sed12g2502 | 505 | FunFam | Cytochrome P450 | 33 | 498 | - | - | |
| Sed12g2502 | 505 | PRINTS | E-class P450 group I signature | 311 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | E-class P450 group I signature | 443 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | E-class P450 group I signature | 433 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | E-class P450 group I signature | 291 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | Pfam | Cytochrome P450 | 40 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | Gene3D | Cytochrome P450 | 34 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | SUPERFAMILY | Cytochrome P450 | 40 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | P450 superfamily signature | 443 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | P450 superfamily signature | 434 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | P450 superfamily signature | 356 | 367 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2502 | 505 | PRINTS | P450 superfamily signature | 302 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g0443 | Sed-Chr10:2777544 | Sed12g2502 | Sed-Chr12:34536214 | 1.90E-62 | dispersed | |
| Sed10g0444 | Sed-Chr10:2798702 | Sed12g2502 | Sed-Chr12:34536214 | 8.10E-66 | dispersed | |
| Sed12g1171 | Sed-Chr12:7820742 | Sed12g2502 | Sed-Chr12:34536214 | 5.80E-79 | dispersed | |
| Sed12g2502 | Sed-Chr12:34536214 | Sed10g2110 | Sed-Chr10:37578772 | 1.10E-09 | dispersed | |
| Sed05g0087 | Sed-Chr5:471390 | Sed12g2502 | Sed-Chr12:34536214 | 4.50E-117 | transposed | |
| Sed08g1486 | Sed-Chr8:29356077 | Sed12g2502 | Sed-Chr12:34536214 | 1.20E-154 | transposed | |
| Sed12g2502 | Sed-Chr12:34536214 | Sed08g0036 | Sed-Chr8:169980 | 1.70E-233 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g2502 | K20665 | - | csv:101202989 | 785.793 |