Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2502 ATGCAACTCAACGTCCCCAATTCCCTCTTCTTCCTTATTTCTCTTTCTTTATGGACTTTCTTTTTTATTCATCTTTCCATCAATAAATTCTTCTACTTCTACGCCAACCGCTTTTCCCCTCCTTCTTACCCTTTCATCGGCTGCTTGATCTCTTTCTACACAAACCGGCACCGCCTTCTGAGCTGGTACACCGACCTACTCTCCCACTCCCCGACTCGAACCATCGTGGTGCAGCGGATTGGTTCGAGGCGCACCGTTGTCACCGCCAACCCGGCTAACGTTGAGTACATGCTCAAGACTAATTTTATTAACTACCCTAAAGGGAAGGCGTTCACTGATATACTCGGCGATCTCCTTGGTTGTGGCATTTTCAACGTCGACGGCGAGTTGTGGTCCACGCAACGCAAGCTCGGTAGCCATGAATTTTCCGCTAATTCTTTGAGGGAATTCGTCGTTAAGACGCTTGAAGACGAGGTTCATCTCCGTTTGATTCCGTTGCTTCTAAACGCTGCTCGGACGAACGGTGTCTTGGATTTGCAAGATGTTCTGGGTCGGCTCGCTTTTGACACCGTTTGTAAGGTAACGCTAGGAACGGACGAACAATGTTTAGACATGTCTCGCCCAGTTCCAGCCATAGTAAACGCATTCGACACGGCTACAAGAATCAGCGCAAGCCGAGCCATAGCGCCACTCTATATGGCTTGGAAAGCCAAGCGCTTGTTCAACATCGGCTCAGAGAAGCGGCTCAAAGAAGCCGTGCAAACGGTCCACACATGGGTCTCCGACATCATTCATAGCAAAACCCTGGACAACATAAACAAACACACCGACTTGTTATCTCGGTTGATGTCCGCTGGGCACGGCGGCGCGATGGTCCGAGACATGGTCGTGAGCTTCATAATGGCCGGGCGTGACACCACCTCCGCCGCCATGACATGGCTCTTCTGGCTGCTTACGAAACACCCCGAAGCCAAACAGACCCTTATGAACGAACTCACTTCCTTGCCCCAAACAGCGTCGTTGGGTTACGGCTACGAGGAACTGAAGGAAATGAAGTATTTGAAGGCGTGTTTGTGTGAGTCCATGCGGCTCTACCCGCCCGTGGCTTGGGATTCCAAGCACGCTGCGGCACCCGACGTTTTGCCCGACGGAACTCCTGTGGGGAAAGGGGATAGAGTCACGTATTTTCCGTATGGAATGGGGCGGATGGAGGAGCTGTGGGGGAAGGACCGGCTTGAGTTTAAACCGGACCGGTGGTTTGAAAACGGGGAATTCAAACCGGTCAGTCCGTTTAAGTTTCCGGTTTTTCAAGCCGGTCCGAGGATGTGCTTGGGAAAGGAAATGGCGTTCATTCAGATGAAATACGTGGTGGCCACGATTTTGAAGCGCTTTGAATTTAGACTTGTGAGTGAAAACCAGCCGGTTTTTATCCCCTTGTTGACAGCTCATATGGCTGGTGGATTGCAAGTTTATGTCACAGACAGAACTCAACAAAACTCAACCTTTAATGAGGATTAA 1518 50.53 MQLNVPNSLFFLISLSLWTFFFIHLSINKFFYFYANRFSPPSYPFIGCLISFYTNRHRLLSWYTDLLSHSPTRTIVVQRIGSRRTVVTANPANVEYMLKTNFINYPKGKAFTDILGDLLGCGIFNVDGELWSTQRKLGSHEFSANSLREFVVKTLEDEVHLRLIPLLLNAARTNGVLDLQDVLGRLAFDTVCKVTLGTDEQCLDMSRPVPAIVNAFDTATRISASRAIAPLYMAWKAKRLFNIGSEKRLKEAVQTVHTWVSDIIHSKTLDNINKHTDLLSRLMSAGHGGAMVRDMVVSFIMAGRDTTSAAMTWLFWLLTKHPEAKQTLMNELTSLPQTASLGYGYEELKEMKYLKACLCESMRLYPPVAWDSKHAAAPDVLPDGTPVGKGDRVTYFPYGMGRMEELWGKDRLEFKPDRWFENGEFKPVSPFKFPVFQAGPRMCLGKEMAFIQMKYVVATILKRFEFRLVSENQPVFIPLLTAHMAGGLQVYVTDRTQQNSTFNED 505
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 34536214 34538713 - Sed0010893.1 Sed12g2502 733458
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2502 505 CDD CYP86A 73 488 - -
Sed12g2502 505 PANTHER CYTOCHROME P450 25 488 - -
Sed12g2502 505 FunFam Cytochrome P450 33 498 - -
Sed12g2502 505 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 Pfam Cytochrome P450 40 477 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 Gene3D Cytochrome P450 34 504 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 SUPERFAMILY Cytochrome P450 40 495 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed12g2502 505 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0443 Sed-Chr10:2777544 Sed12g2502 Sed-Chr12:34536214 1.90E-62 dispersed
Sed10g0444 Sed-Chr10:2798702 Sed12g2502 Sed-Chr12:34536214 8.10E-66 dispersed
Sed12g1171 Sed-Chr12:7820742 Sed12g2502 Sed-Chr12:34536214 5.80E-79 dispersed
Sed12g2502 Sed-Chr12:34536214 Sed10g2110 Sed-Chr10:37578772 1.10E-09 dispersed
Sed05g0087 Sed-Chr5:471390 Sed12g2502 Sed-Chr12:34536214 4.50E-117 transposed
Sed08g1486 Sed-Chr8:29356077 Sed12g2502 Sed-Chr12:34536214 1.20E-154 transposed
Sed12g2502 Sed-Chr12:34536214 Sed08g0036 Sed-Chr8:169980 1.70E-233 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2502 K20665 - csv:101202989 785.793