Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2505 ATGGCGGCCACCAACACGAGCGGCGTGGACGAGCGAGTCTTGGCCACCGCTCAGCAGATCGTCAACAGCCTCAATACCCCCAAGGAGGTTCGCGAGGACATGCTCTTCATTCTCTCCACTTTCGACAATCGTCTTTCCACTATGAGTAGCCTCATCAACACGGACGATTCAGACACCTTCGACGCTGCCGAGAACCTCATTCTTCGTTGGGACCCTAACTCCGATGCTTCCTCACAGTCCCTTAATTGGGACGAGGCCGCCGAGTATCTGTCGGCCGTCGATCATATACTCCGCCTACTCGGGTCCCACTCCACTGCCATCCTAGACCGGGCCGAATACGCCATCCAAATCGCCATGTGCCGCCTCGAGACCGAATTCCGCCATATCCTGATTCAAAGCACAGTCCCTCTCGACGCCGATCGCCTCTACGGCTCCATCCGGAGGCTTCATCTCTCCTTTGCCTCCAATTACTGTGAATTTGACCACGAATTCGACAGTTTCGGCGACGAGGCTCGCACCTCCGGGCGCTTCCACGAGCGAGGTGCCACAATTGGAGAAGACTCTTGGGTCGATTTGATCCACCCCGATGCCGCTGTCGATCTTTCGGAGATTGCGGACCGGATGCTTCGTTCTGGCTACGACAAGGAATGTGTTCAAGTCTACAGCACGGTTCGTCGCGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGGCTGAGCATTGAGGAAGTTCAGAAGAGTGACTGGAAGTTTCTTGACGAGAAGATGAAGAAATGGATCCAGGCCGTGAAAATTACAGTCCGGGTGATTTTGGACGGTGAGAAGAAGCTCTGTGATCAGATTTTCAATGGTGCCAATGAATCCAAGGAGATTTGTTTTAACGAAACAGTGAAAGGGTGTGTAATGCAGCTGTTGAATTTTGGTGAGGCCGTTGCTATTGGGAATAGGTCACCCGAGAAGCTGTTTCGAATCTTAGATATGTATGATGCTTTGGCCGGCGTTTTTCCCGACTTGGAAGCCATGGTTTCCGATGAGTTTCTGATCAGTGAAGCGCATGAAGTGTTGTCTGGATTGGGAGAAGCAGCTGCAGGGACATTTGCTGAGTTTGAGAATGCCATCGAAAGCGAAAATTCGAAGAAGGTGATGCAAAATGCTGATATCCACCCGCTCATTCGATATGTAATGAATTATGTGAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGCACAAGACTTGAAGAACACGAACGATGATGGCGATAATCTGCAGTTAGAAAGCACGTCGCCTTTAGCTCGTAGATTGTCTATGTTGTTATTATCTTTGGAATCCAATCTTGTGGTTAAGTCAAAACTATATGAGGATGTTTCTATGCAGTTCATATTTCTAATGAACAATATAGTGTACATAGTGAAAAAAGTGAGAGATTCCGAGCTTGCCCAGCTGCTTGGCAATATCTGGCTTCGCAGGCACAGCGGCCAAATTCGCCAATTCGAAACGAGTTACCTTAGAGCCTCTTGGACCAAAGTTTTGTCTTGCTTAAAGGATGAAGGCATTGGTGGGAGCACAAGCAATGCCTCCAAAGTGGCTTTAAAGGAAAAGTTCAAGAATTTCAATGCAGGCTTTGAGGAAATCTGCAGGGTTCAGACATCTTGGAAGGTATCTGATACTCAACTGCGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCATATCGCTCCTTCTTGGGAAGGTTTAGAAACCAATTAGAGAGCGGAAGAAATTCCGGGAAGTACATAAAGTACACGCCCGAGGATTTAGAGAACTCCCTAACAAATCTATTTGAAGGATCACCTATTGTTTCACATCATTTGAGAAGAAAGGGAACTTGA 1908 47.96 MAATNTSGVDERVLATAQQIVNSLNTPKEVREDMLFILSTFDNRLSTMSSLINTDDSDTFDAAENLILRWDPNSDASSQSLNWDEAAEYLSAVDHILRLLGSHSTAILDRAEYAIQIAMCRLETEFRHILIQSTVPLDADRLYGSIRRLHLSFASNYCEFDHEFDSFGDEARTSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMLRSGYDKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRVILDGEKKLCDQIFNGANESKEICFNETVKGCVMQLLNFGEAVAIGNRSPEKLFRILDMYDALAGVFPDLEAMVSDEFLISEAHEVLSGLGEAAAGTFAEFENAIESENSKKVMQNADIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEAQDLKNTNDDGDNLQLESTSPLARRLSMLLLSLESNLVVKSKLYEDVSMQFIFLMNNIVYIVKKVRDSELAQLLGNIWLRRHSGQIRQFETSYLRASWTKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTSWKVSDTQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLTNLFEGSPIVSHHLRRKGT 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34551622 34554272 - Sed0020327.1 Sed12g2505 733461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2505 635 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 623 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed12g2505 635 Pfam Exo70 exocyst complex subunit C-terminal 259 617 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed12g2505 635 Pfam Exocyst complex component Exo70 N-terminal 59 132 - -
Sed12g2505 635 SUPERFAMILY Cullin repeat-like 58 621 IPR016159 -
Sed12g2505 635 Gene3D Exocyst complex component Exo70 74 628 - -
Sed12g2505 635 FunFam Exocyst subunit Exo70 family protein 73 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0018 Sed-Chr6:141779 Sed12g2505 Sed-Chr12:34551622 1.00E-120 dispersed
Sed06g2306 Sed-Chr6:46432933 Sed12g2505 Sed-Chr12:34551622 1.30E-107 dispersed
Sed08g2438 Sed-Chr8:37407388 Sed12g2505 Sed-Chr12:34551622 8.20E-228 dispersed
Sed11g0918 Sed-Chr11:22565168 Sed12g2505 Sed-Chr12:34551622 1.90E-25 dispersed
Sed12g2505 Sed-Chr12:34551622 Sed14g0271 Sed-Chr14:2835407 2.70E-95 dispersed
Sed01g1563 Sed-Chr1:11366071 Sed12g2505 Sed-Chr12:34551622 7.60E-226 wgd
Sed12g2505 Sed-Chr12:34551622 Sed08g0032 Sed-Chr8:145981 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2505 K07195 - csv:101205970 1025.0