Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g2510 | ATGAAATCTGAAAACGCAGAGCTGAAAGAAAGGAATCCTTATCTCAACTCTTTTGGGAGTTCAAATATTTCTCACAATTTTTATGCTTCAAATCCTCAAATCCACTGCCGCATTTTACCAATCCCATCCCAGCTAGAACCGCCGCCGGCCGATATGGAGAGCAACAACCAGGGCCAGTCTTCTTCCCCTTACCCTCCTCCGCCGCCGCCACAGTCCGGCGTGGGGGCCCCTCCGTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAAATGTTCTGGTCCTTTCAGCGGCAAGAAATCGAACAGGTTAGCGATTTCAAGAACCACCAGCTTCCTCTGGCCCGCATCAAGAAGATCATGAAAGCCGACGAGGACGTGCGGATGATCTCCGCCGAAGCCCCCATTCTGTTCGCGAAGGCGTGCGAGCTCTTCATCCTCGAGCTCACCATCAGGTCCTGGCTCCACGCCGAGGAGAACAAGAGGCGAACCTTGCAGAAGAACGACATTGCCGCCGCCATCACCCGCACCGATATCTTCGATTTCTTGGTCGATATCGTGCCCAGGGATGAGATCAAGGACGACCCTGGCCTCGTCGGAGTTGGAGCCACTGCTAGTGGAGTCCCCTACTATTATCCGCCTATGGCCCAACCGCCTCCTGGGATGATGATCGGGAGACCTGCAATGGATCCCACCGGAGTTTACGCCCAGCCGCCGTCGCAGGCTTGGCAATCGGTGTGGCAGACGGCGGAGGACAGCTCTTACGCCAGTGGAGGAAGCACCGGCCAGGGCAATCTTGATCCTTAG | 807 | 56.38 | MKSENAELKERNPYLNSFGSSNISHNFYASNPQIHCRILPIPSQLEPPPADMESNNQGQSSSPYPPPPPPQSGVGAPPFHHLLQQQQQQLQMFWSFQRQEIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDPGLVGVGATASGVPYYYPPMAQPPPGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAEDSSYASGGSTGQGNLDP | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 34582456 | 34585798 | - | Sed0004647.1 | Sed12g2510 | 733466 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g2510 | 268 | FunFam | Nuclear transcription factor Y subunit gamma | 80 | 189 | - | - | |
| Sed12g2510 | 268 | MobiDBLite | consensus disorder prediction | 41 | 78 | - | - | |
| Sed12g2510 | 268 | Pfam | Core histone H2A/H2B/H3/H4 | 102 | 174 | IPR007125 | GO:0003677(InterPro) | |
| Sed12g2510 | 268 | MobiDBLite | consensus disorder prediction | 61 | 75 | - | - | |
| Sed12g2510 | 268 | Gene3D | Histone, subunit A | 79 | 189 | IPR009072 | GO:0046982(InterPro) | |
| Sed12g2510 | 268 | SUPERFAMILY | Histone-fold | 80 | 183 | IPR009072 | GO:0046982(InterPro) | |
| Sed12g2510 | 268 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 85 | 194 | IPR050568 | GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
| Sed12g2510 | 268 | MobiDBLite | consensus disorder prediction | 246 | 268 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g1805 | Sed-Chr10:35109340 | Sed12g2510 | Sed-Chr12:34582456 | 5.90E-52 | dispersed | |
| Sed07g1598 | Sed-Chr7:13031819 | Sed12g2510 | Sed-Chr12:34582456 | 7.30E-23 | transposed | |
| Sed12g2510 | Sed-Chr12:34582456 | Sed08g0028 | Sed-Chr8:107730 | 7.90E-81 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 40308 | PF00808 | CBFD_NFYB_HMF | 3.20E-17 | CL0012 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g2510 | - | - | - | 0.0 |