Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2534 ATGATTATATGTTTCGCAATGGGAGGCGCTATGTTAAACCTTACTACTTCGAGTTCATTGCTCATGTATGTGAGTCCATACTTTCTTTTCCACTTTAAACTTTCAGTATTACGAATTTTATGTTTCCAGGTTAAGAATCGATGGGCCGGCAAAACCATTGTCGACTTGTTTTCTGAAGAATTTAAAGGCCGACCTTACCACTACTATCTTGATGCTGTCCAATGTGGCCGCATACAAGTCGATGGGGACATCGTGCCTGTATCCTATATACTTAAATCATCTCAAAAGATATCCCATTTCCTGCACAGGCATGAGCCGCCAGTAATGGCTTTGGACGTGAAAATTCTCAAACAGGAAGCAGATGTGCTGACGGTTTGCAAGCCTGCATCCGTTCCGGTTCATCCATGTGGTCAATATAGGAAAAACACAGTTGTTGGTATACTTCAGGCAGAGCATGCTATACATCGACTAGACCGCCTTGTCTCAGGACTTCTTATCATTGCTAGAAATGCATCCAAAGCTGACCTTTTCAGACAACAGATTGAGTCCGGGCTGGTGAAGAAACAGTATATAGCAAGGGTAGTGGGTGTATTTCCAGAAGAAGAGGTGGTTGATGTTAACATAAACTATAATGCTCGAGAGGGAAGGAGCACAGCTGAGATGGTTGATTCTTGCACGGATACGCCAACAAAGGGAAAGACTGCTCAAACAAAGTTTACTCGCATCAGCTCGGATGGAGTCCATAGCATTGTTTTATGCGAACCGATCACTGGCCGAACTCATCAAATCCGTGTGCATTTGCAGTACACAGGGTACCCTATCGCCAACGACGCACTTTACCTTACAAAAGAAGCTTCTGGCCGTTCTGTGGAAAACACAACTGCAGATAGAGCTGCTGCATTGTCAGTGCGTTCTCCAGCACGTGATATTGAAGAAGATTGTGTTGATGCACGTAACGAGAACGCAAGTGAAGATTTTAGCATTGATCCCATGTGTACAAACTGTCCGAATTTGGCTCCAAAAGGATACGAGGGAGAAGAAGAGGGTTTGTGGCTGCATTGTGTTCAGTATTCTGGACCGGGATGGAACTACGGATGCCCGTATCCAGATTGGGCTTCACTTAAATAA 1128 44.41 MIICFAMGGAMLNLTTSSSLLMYVSPYFLFHFKLSVLRILCFQVKNRWAGKTIVDLFSEEFKGRPYHYYLDAVQCGRIQVDGDIVPVSYILKSSQKISHFLHRHEPPVMALDVKILKQEADVLTVCKPASVPVHPCGQYRKNTVVGILQAEHAIHRLDRLVSGLLIIARNASKADLFRQQIESGLVKKQYIARVVGVFPEEEVVDVNINYNAREGRSTAEMVDSCTDTPTKGKTAQTKFTRISSDGVHSIVLCEPITGRTHQIRVHLQYTGYPIANDALYLTKEASGRSVENTTADRAAALSVRSPARDIEEDCVDARNENASEDFSIDPMCTNCPNLAPKGYEGEEEGLWLHCVQYSGPGWNYGCPYPDWASLK 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34666160 34674416 + Sed0013194.4 Sed12g2534 733490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2534 375 FunFam Pseudouridine synthase 109 358 - -
Sed12g2534 375 SUPERFAMILY Pseudouridine synthase 105 369 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed12g2534 375 ProSitePatterns Rlu family of pseudouridine synthase signature. 154 168 IPR006224 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed12g2534 375 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 43 373 IPR050188 GO:0000455(PANTHER)|GO:0009982(PANTHER)
Sed12g2534 375 Gene3D Pseudouridine synthase 113 311 - -
Sed12g2534 375 CDD PseudoU_synth_ScRIB2 98 373 - -
Sed12g2534 375 Pfam RNA pseudouridylate synthase 121 268 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2534 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2531 Sed-Chr12:34666160 Sed12g2534 Sed-Chr12:34666160 9.80E-218 dispersed
Sed12g2532 Sed-Chr12:34666160 Sed12g2534 Sed-Chr12:34666160 2.90E-194 dispersed
Sed12g2533 Sed-Chr12:34666160 Sed12g2534 Sed-Chr12:34666160 1.00E-196 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g66 . . . Bda15g00683 Bpe12g00469 . . . . . Cma10g00039 Cma11g00018 Car10g00031 Car11g00016 Sed12g2534 . Cpe04g01631 Bhi02g00655 Tan09g2405 Cmetu02g0008 . Hepe09g0029 . . Cla06g01762 Cam06g1955 Cec06g2005 Cco06g2010 Clacu06g1913 Cmu06g1853 Cre06g2666 . . Cone13ag0241 . . . . . . . . . . . . Bma08g00268 . Cmo10g00037 Cmo11g00017 . . . . . Cpe18g00921 . . . . . . . . . . . . . . Lsi06g01661 Csa01g00032 Chy02g02683 Cme02g02089
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006251 1 3 0 1 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 38