Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2546 | ATGGAAAAACAGAATATTATTAGTAGTGGTAGTAGTGGTTGTAAGGAGTTGGAGTTGGATCTGGGATCCGACGAGCCTGATCGCGACCTGGCATCTCTCCCCCTCGCCCTTACTTCCCGGGTTGTTCACATGTTGGGTGGCATGGCAACATCAGCTCCTGCATACACCAGCTTTTCCCAATGGCTTGAGGTCGTTCGTAAACGCCATCGCAGCAGCATCCCTCATTTGGATATGCCGCCGCCCTCTTGCAGCAGCAGCATTGATCAATCCCTAACTTGTACCGCTGCTGCTAGTTCTACTACTACTACTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCACCTCCCCAGCAGCAAACGAATTTGTTGGATAGACTCGCTAAGGCTTCCATGTTGGATATCGACTCCTCCTCTTTTTCCTGGGACTCCCTTCTCTCCCTTCACCGCTCCGAACATCATACCAATACCACCGCCACCGAACATTCCGATGATCATGACATCCTCATCAATAAGCCCCTTGAGGTCACTGTCAATTCTGGTGGAGTCGTTTTCTTTGCACTCTTCCACCAACTTCCTTATGATGACCCTACCAATACTCCCCCCAAGGAAGCTGCTGCTGTTATCAAGATATCCTCTTCCAGAATGGCCACCCAATCCGAACGCCTCGGTTACGAATTTGCTAAGTACCTTGGGGTTCAAACTCCGCAGCCTAGAGTTATCCATAACTCCACCCTCGAATGGCTCCAAATCAAAGCAGCTGCAGAGAAAGCTCGAGATGCTGCCTCTTTCGAGGGTGATGAGGTTGCTCAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTCATGAGCTATGTACATGGGTCTCCTTTGTTAGAAAGTTCAAGTGCATTTGAATCAAGGGAAATAGCTGAAGAATTAGCTGCTGCTATTGGAAGGATCTTGTTATTGGACCTTGTTATCAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCTGCAAATTTGCTATTGGTTGATAGAATGACATGTGCAAATATGAATACACTTGAGGAAGCGTTTGATTCGGCCATTAAGCTGTATAGACCAAAAGTTGTTGCAACGCTTCAAAAAGAAAGAAGGACAACTTCAGTAGACAGCAGACAGAGTTCTAACTTAGGGCTGGTATCAGAGTCCTCTGAACTTTGTGAGATCGTCGAGTCCCCAAAATCTAGTAATCTAAGTGTAAAAAGTCGAGTATCAAATGAAACAATGCCTTGTGATTTTAACATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCAGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAGTTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTGATCTACTACATGATATTACAGGAGGGAAATTGGGGTTTCCTTCTCAAGAAGATTCGAACTCAACTACTGGTATGCAGCTTATGAATATGAGCTCTATTGTTCATGAATTTCGATATGGGTTTCGTGCGGCTCTTAGGGACTTGCAAGGATTTCACATATTTTTACTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATCATAGACAAATTTCCTTTGGGGGAATCCGATAAAGAAGATTCAGGTGTTCCAGAGTCCCATTTGCAGGGTTCTACCAATATTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGACAGTAATATGGATGTTACAGATTCAGTCCCAAGGGCATCACCGTCAGTAAATAAAGAAAGCACAGATTTATCTTCTCCCTTATCACGAGATAATTTACAAGGAAAGCTATACAAGGGAAGTGCAGAGCCAATTCATTGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAGGTTGATGCAGAATCAAACAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTTTGCCAAGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGTGATAGTTATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAACACATTCTTGAAAGGATTGCACTGATATCCGAGGCTGCTAATACAGAAAGGCCTTCTTCAGTCACAACTGCCTTATTTATTGGAGGTGCTTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTTGGAGTCACTCACATTTTATGTCTCTGCTCAAATGAGATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAACTTTTCAATAAGTGACGACGAGGATTCACACATCAGCAGTATCTTTGAAGAAGCTTCTGATTTTATTGATGAGGTTGAAAGAAAGGGTGGTAAGGTCCTGGTTCATTGCTTTGAAGGGAAAAGTAGAAGTGCCACATTGGTTCTTGCTTACTTGATGATCAGAAAGAAGTACACGCTGTTAAAAGCATGGAATTGTTTGAAACGAGTTCACCGTCGTGCTCAACCTAATGATGGGTTTGCTAAAACATTAGTAGAATTAGATCGAAGAATACATGGGAAAGTTTCGATGGAGTGGCAATCACGGAAGCCAAGTATGAAAGTGTGTCCAATTTGCGGGAAAAATGCTGGTCTGAGCAGTAGCTCACTGAAGCTTCATCTGCAAAAGTCTCACAAAAAGCTTTCATCTGGGAGCGTAGACAGTGCAATGACCATGGAAATTCAAAAGGCATTAACAGATCTCAGAATCAGTCGTGGCGGAAGCGTCAGCCCCACCCAGAGGCAATCTCTTCTCATCTTGGATGAATAG | 2832 | 43.26 | MEKQNIISSGSSGCKELELDLGSDEPDRDLASLPLALTSRVVHMLGGMATSAPAYTSFSQWLEVVRKRHRSSIPHLDMPPPSCSSSIDQSLTCTAAASSTTTTAAAAAPPPPPPPQQQTNLLDRLAKASMLDIDSSSFSWDSLLSLHRSEHHTNTTATEHSDDHDILINKPLEVTVNSGGVVFFALFHQLPYDDPTNTPPKEAAAVIKISSSRMATQSERLGYEFAKYLGVQTPQPRVIHNSTLEWLQIKAAAEKARDAASFEGDEVAQMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREIAEELAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLVDRMTCANMNTLEEAFDSAIKLYRPKVVATLQKERRTTSVDSRQSSNLGLVSESSELCEIVESPKSSNLSVKSRVSNETMPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSDLLHDITGGKLGFPSQEDSNSTTGMQLMNMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIIDKFPLGESDKEDSGVPESHLQGSTNIHCLSPRGKERASSDSNMDVTDSVPRASPSVNKESTDLSSPLSRDNLQGKLYKGSAEPIHCLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSYGVVDAYELKVRLEHILERIALISEAANTERPSSVTTALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSHISSIFEEASDFIDEVERKGGKVLVHCFEGKSRSATLVLAYLMIRKKYTLLKAWNCLKRVHRRAQPNDGFAKTLVELDRRIHGKVSMEWQSRKPSMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTDLRISRGGSVSPTQRQSLLILDE | 943 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 34726490 | 34732594 | + | Sed0025035.1 | Sed12g2546 | 733502 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2546 | 943 | MobiDBLite | consensus disorder prediction | 587 | 614 | - | - | |
Sed12g2546 | 943 | Pfam | Actin-fragmin kinase, catalytic | 120 | 384 | IPR015275 | - | |
Sed12g2546 | 943 | SMART | dsp_5 | 716 | 858 | IPR020422 | GO:0006470(InterPro) | |
Sed12g2546 | 943 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 716 | 861 | IPR020422 | GO:0006470(InterPro) | |
Sed12g2546 | 943 | FunFam | Dual specificity protein phosphatase PHS1 | 688 | 862 | - | - | |
Sed12g2546 | 943 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 781 | 837 | IPR000387 | GO:0016311(InterPro) | |
Sed12g2546 | 943 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 | 28 | 942 | IPR035010 | GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro) | |
Sed12g2546 | 943 | MobiDBLite | consensus disorder prediction | 553 | 614 | - | - | |
Sed12g2546 | 943 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed12g2546 | 943 | Pfam | Dual specificity phosphatase, catalytic domain | 728 | 857 | IPR000340 | GO:0016311(InterPro) | |
Sed12g2546 | 943 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 716 | 860 | IPR029021 | - | |
Sed12g2546 | 943 | SUPERFAMILY | Protein kinase-like (PK-like) | 115 | 454 | IPR011009 | - | |
Sed12g2546 | 943 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 803 | 813 | IPR016130 | GO:0016311(InterPro) | |
Sed12g2546 | 943 | Gene3D | - | 295 | 421 | IPR036940 | - | |
Sed12g2546 | 943 | CDD | DSP | 717 | 854 | - | - | |
Sed12g2546 | 943 | Gene3D | Protein tyrosine phosphatase superfamily | 694 | 862 | IPR029021 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1068 | Sed-Chr12:6998818 | Sed12g2546 | Sed-Chr12:34726490 | 6.50E-09 | dispersed | |
Sed12g1069 | Sed-Chr12:6998818 | Sed12g2546 | Sed-Chr12:34726490 | 8.10E-09 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2546 | K14165 | - | csv:101220184 | 1431.39 |