Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2546 ATGGAAAAACAGAATATTATTAGTAGTGGTAGTAGTGGTTGTAAGGAGTTGGAGTTGGATCTGGGATCCGACGAGCCTGATCGCGACCTGGCATCTCTCCCCCTCGCCCTTACTTCCCGGGTTGTTCACATGTTGGGTGGCATGGCAACATCAGCTCCTGCATACACCAGCTTTTCCCAATGGCTTGAGGTCGTTCGTAAACGCCATCGCAGCAGCATCCCTCATTTGGATATGCCGCCGCCCTCTTGCAGCAGCAGCATTGATCAATCCCTAACTTGTACCGCTGCTGCTAGTTCTACTACTACTACTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCACCTCCCCAGCAGCAAACGAATTTGTTGGATAGACTCGCTAAGGCTTCCATGTTGGATATCGACTCCTCCTCTTTTTCCTGGGACTCCCTTCTCTCCCTTCACCGCTCCGAACATCATACCAATACCACCGCCACCGAACATTCCGATGATCATGACATCCTCATCAATAAGCCCCTTGAGGTCACTGTCAATTCTGGTGGAGTCGTTTTCTTTGCACTCTTCCACCAACTTCCTTATGATGACCCTACCAATACTCCCCCCAAGGAAGCTGCTGCTGTTATCAAGATATCCTCTTCCAGAATGGCCACCCAATCCGAACGCCTCGGTTACGAATTTGCTAAGTACCTTGGGGTTCAAACTCCGCAGCCTAGAGTTATCCATAACTCCACCCTCGAATGGCTCCAAATCAAAGCAGCTGCAGAGAAAGCTCGAGATGCTGCCTCTTTCGAGGGTGATGAGGTTGCTCAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTCATGAGCTATGTACATGGGTCTCCTTTGTTAGAAAGTTCAAGTGCATTTGAATCAAGGGAAATAGCTGAAGAATTAGCTGCTGCTATTGGAAGGATCTTGTTATTGGACCTTGTTATCAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCTGCAAATTTGCTATTGGTTGATAGAATGACATGTGCAAATATGAATACACTTGAGGAAGCGTTTGATTCGGCCATTAAGCTGTATAGACCAAAAGTTGTTGCAACGCTTCAAAAAGAAAGAAGGACAACTTCAGTAGACAGCAGACAGAGTTCTAACTTAGGGCTGGTATCAGAGTCCTCTGAACTTTGTGAGATCGTCGAGTCCCCAAAATCTAGTAATCTAAGTGTAAAAAGTCGAGTATCAAATGAAACAATGCCTTGTGATTTTAACATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCAGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAGTTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTGATCTACTACATGATATTACAGGAGGGAAATTGGGGTTTCCTTCTCAAGAAGATTCGAACTCAACTACTGGTATGCAGCTTATGAATATGAGCTCTATTGTTCATGAATTTCGATATGGGTTTCGTGCGGCTCTTAGGGACTTGCAAGGATTTCACATATTTTTACTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATCATAGACAAATTTCCTTTGGGGGAATCCGATAAAGAAGATTCAGGTGTTCCAGAGTCCCATTTGCAGGGTTCTACCAATATTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGACAGTAATATGGATGTTACAGATTCAGTCCCAAGGGCATCACCGTCAGTAAATAAAGAAAGCACAGATTTATCTTCTCCCTTATCACGAGATAATTTACAAGGAAAGCTATACAAGGGAAGTGCAGAGCCAATTCATTGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAGGTTGATGCAGAATCAAACAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTTTGCCAAGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGTGATAGTTATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAACACATTCTTGAAAGGATTGCACTGATATCCGAGGCTGCTAATACAGAAAGGCCTTCTTCAGTCACAACTGCCTTATTTATTGGAGGTGCTTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTTGGAGTCACTCACATTTTATGTCTCTGCTCAAATGAGATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAACTTTTCAATAAGTGACGACGAGGATTCACACATCAGCAGTATCTTTGAAGAAGCTTCTGATTTTATTGATGAGGTTGAAAGAAAGGGTGGTAAGGTCCTGGTTCATTGCTTTGAAGGGAAAAGTAGAAGTGCCACATTGGTTCTTGCTTACTTGATGATCAGAAAGAAGTACACGCTGTTAAAAGCATGGAATTGTTTGAAACGAGTTCACCGTCGTGCTCAACCTAATGATGGGTTTGCTAAAACATTAGTAGAATTAGATCGAAGAATACATGGGAAAGTTTCGATGGAGTGGCAATCACGGAAGCCAAGTATGAAAGTGTGTCCAATTTGCGGGAAAAATGCTGGTCTGAGCAGTAGCTCACTGAAGCTTCATCTGCAAAAGTCTCACAAAAAGCTTTCATCTGGGAGCGTAGACAGTGCAATGACCATGGAAATTCAAAAGGCATTAACAGATCTCAGAATCAGTCGTGGCGGAAGCGTCAGCCCCACCCAGAGGCAATCTCTTCTCATCTTGGATGAATAG 2832 43.26 MEKQNIISSGSSGCKELELDLGSDEPDRDLASLPLALTSRVVHMLGGMATSAPAYTSFSQWLEVVRKRHRSSIPHLDMPPPSCSSSIDQSLTCTAAASSTTTTAAAAAPPPPPPPQQQTNLLDRLAKASMLDIDSSSFSWDSLLSLHRSEHHTNTTATEHSDDHDILINKPLEVTVNSGGVVFFALFHQLPYDDPTNTPPKEAAAVIKISSSRMATQSERLGYEFAKYLGVQTPQPRVIHNSTLEWLQIKAAAEKARDAASFEGDEVAQMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREIAEELAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLVDRMTCANMNTLEEAFDSAIKLYRPKVVATLQKERRTTSVDSRQSSNLGLVSESSELCEIVESPKSSNLSVKSRVSNETMPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSDLLHDITGGKLGFPSQEDSNSTTGMQLMNMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIIDKFPLGESDKEDSGVPESHLQGSTNIHCLSPRGKERASSDSNMDVTDSVPRASPSVNKESTDLSSPLSRDNLQGKLYKGSAEPIHCLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSYGVVDAYELKVRLEHILERIALISEAANTERPSSVTTALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSHISSIFEEASDFIDEVERKGGKVLVHCFEGKSRSATLVLAYLMIRKKYTLLKAWNCLKRVHRRAQPNDGFAKTLVELDRRIHGKVSMEWQSRKPSMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTDLRISRGGSVSPTQRQSLLILDE 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34726490 34732594 + Sed0025035.1 Sed12g2546 733502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2546 943 MobiDBLite consensus disorder prediction 587 614 - -
Sed12g2546 943 Pfam Actin-fragmin kinase, catalytic 120 384 IPR015275 -
Sed12g2546 943 SMART dsp_5 716 858 IPR020422 GO:0006470(InterPro)
Sed12g2546 943 ProSiteProfiles Dual specificity protein phosphatase domain profile. 716 861 IPR020422 GO:0006470(InterPro)
Sed12g2546 943 FunFam Dual specificity protein phosphatase PHS1 688 862 - -
Sed12g2546 943 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 781 837 IPR000387 GO:0016311(InterPro)
Sed12g2546 943 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 28 942 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
Sed12g2546 943 MobiDBLite consensus disorder prediction 553 614 - -
Sed12g2546 943 MobiDBLite consensus disorder prediction 1 27 - -
Sed12g2546 943 Pfam Dual specificity phosphatase, catalytic domain 728 857 IPR000340 GO:0016311(InterPro)
Sed12g2546 943 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 716 860 IPR029021 -
Sed12g2546 943 SUPERFAMILY Protein kinase-like (PK-like) 115 454 IPR011009 -
Sed12g2546 943 ProSitePatterns Tyrosine specific protein phosphatases active site. 803 813 IPR016130 GO:0016311(InterPro)
Sed12g2546 943 Gene3D - 295 421 IPR036940 -
Sed12g2546 943 CDD DSP 717 854 - -
Sed12g2546 943 Gene3D Protein tyrosine phosphatase superfamily 694 862 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1068 Sed-Chr12:6998818 Sed12g2546 Sed-Chr12:34726490 6.50E-09 dispersed
Sed12g1069 Sed-Chr12:6998818 Sed12g2546 Sed-Chr12:34726490 8.10E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2546 K14165 - csv:101220184 1431.39