Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0001 ATGGAGCAAGGAGATGGAATTGAAGAAGGAAGCTCAAGATTGGTGGCGGGTAATAGCGTTGGTGGGAGCAGTAGTAATGAGTGCAACAGCAACAGGTGGGTTGACGGCAGTGAAGTGGACTCCGAGTCCCCTCCATGGTCACAGCTGTTTGAAGGGGAAGGCTATGGATCTCTGAGAAGGAGGTTGCTTAAGAAGCCCAAGAGAGTTGATTCTTTTGACGTCGAAGCAATGGAGATTGCCGGCGCCGACCACCATTTAAAGGATGTTTCAACTTGGCAAACTCTTTCTATTGCGTTTCAAACGCTTGGCGTTGTATATGGGGACATGGGTACGAGCCCATTATACGTCTTTGGGGATGTATTCAGCAAGGTGCATATTCAGGAAGATGTTGACGTCCTCGGGGCTCTATCCTTGGTCATTTACACAATTGCTCTTATTCCTTTGGCAAAATATGTTTTTGTTGTCCTCAGAGCCAACGACAATGGCGAAGGCGGAACATTTGCATTGTATTCACTCATCTGTAGGTATGCCAAAGTTAACATGCTGCCAAACCGTCAACCAGCTGATGAACATATCTCAAGTTTCAAGCTCAAACTACCCACTCCACAGTTGGAAAGGGCCTTGCATATCAAAGAGACTCTCGAAAAGAGATCCTCCTTGAAAACTCTTATATTACTGCTGGTTCTCATGGGCACTTCAATGATTATTGGGGATGGTATTCTAACCCCAGCTATATCAGTGATGTCTGCTGTGAGTGGTCTGCAGGGACAGATAAAGTCATTTGATACGAATGCTGTTGTCATTGTTTCAATTATAATCCTTGTGGCCTTGTTCAGCATACAGAAATTTGGGACCGGGAAAGTAGGATTTATGTTTGCTCCTGTGCTTGCTTTGTGGTTTCTTAGTCTGGGATCTATTGGAATTTACAATCTAGTGAAGTATGATCTCACCGTTGTAAGGGCTCTCAATCCCGCTTACATCTATTTATTCTTTAAGAAAAATTCAAATAATGCCTGGTCAGCTCTCGGTGGTTGTATTTTGTGTGTAACAGGAGCTGAAGCAATGTTTGCTGATCTGGGCCATTTCACTGTGCCAGCCATACAGATTGCCTTCACATTTGTTGTTTTCCCCTGCCTTCTATTGGCTTATATGGGCCAGGCTGCATACCTTATGAAACATCCAGATTCTGCAGCAAGAATATTTTATGATTCTGTGCCAGCAAGTCTTTTTTGGCCAGTCTTTGTGACAGCAACACTTGCTGCTATGATTGCAAGCCAAGCAATGATATCTGCAACCTTTTCTTGTGTCAAGCAATCTATGGCTCTTGGATGTTTTCCGAGAATGAAGATAGTTCACACTTCTAAGAGACGAATGGGTCAAATTTACATCCCTGTGATCAATTGGTTTTTGATGATAATGTGCATATTTGTCGTTGCAATATTTCGAAGTACTACAGACATTGCCAATGCTTATGGTATTGCTGAAGTTGGTGTGATGCTGGCGAGCACTGTCCTGGTTACTGTAGTAATGCTTCTGATCTGGCAGACAAATTTGTTTCTTGCGTTGTGTTTTCCACTTGTATTTGGGTCAGTCGAGTTAATCTACATGTCTGCAGTGTTATCAAAAATCAGCGAGGGCGGGTGGTTGCCACTTGCTTTTGCTTCTATCTTTCTCTCTGTGATGTACACATGGAACTTTGGGAGCGTGTTGAAGTATCAAAGTGAGGTGAGAGAGAAGATATCAATGGATTTCTTGCTTGAACTGGGATCTACCCTCGGAACTGTAAGAGTTCCAGGAATTGGTCTCCTCTACAATGAGCTTGTCCAAGGCATTCCTGCAATTTTTGGGCAATTTCTTCTTAGCCTTCCAGCCATCCACTCCACAATTATGTTTGTGTGCATCAAATATGTTCCAATCCCAGTGGTTCCGCAAGAGGAAAGGTTTTTGTTTAGAAGGGTTGGCCCAAAAGATTACCATATGTTTCGCTGCATCGTGAGATATGGTTACAAGGATGTGCGGAAGGAAGATCATCATGCATTTGAGCAACTTTTGATGGAAAGCCTCGAGAAGTTCTTAAGAAAGGAGGCTCAAGATCTTGCTCTGGAGAGCAACTTGAATGAGTTGGAAATTGATAACATTTCAGAGAGGTCGCGATATTCTCCAACTCCGAGTGTTATCAATGTGAATGAGGAGCTGAGAATTCCATTGATGGAAGAGGCAAGAACATTGAGTTCGGAAGAAACCGTTGGGGTGCAGTTGCCATCCAGCATTATGGCATCTGATGACGACCCTAGTTTGGAGTATGAGCTATCAGCCCTTCGGGAAGCAATGGATTCAGGATTTACATATCTACTGGCACAGGGGGATGTCCGAGCGAAGAAAAACTCATTTTTTATCAAGAAGCTTGTTATTAACTATTTCTATGCATTCCTAAGGAGGAACTGTAGGGGTGGTGCAGCCACAATGCGAGTTCCACATATGAATATCATGCAAGTTGGGATGACTTACATGGTCTGA 2517 43.46 MEQGDGIEEGSSRLVAGNSVGGSSSNECNSNRWVDGSEVDSESPPWSQLFEGEGYGSLRRRLLKKPKRVDSFDVEAMEIAGADHHLKDVSTWQTLSIAFQTLGVVYGDMGTSPLYVFGDVFSKVHIQEDVDVLGALSLVIYTIALIPLAKYVFVVLRANDNGEGGTFALYSLICRYAKVNMLPNRQPADEHISSFKLKLPTPQLERALHIKETLEKRSSLKTLILLLVLMGTSMIIGDGILTPAISVMSAVSGLQGQIKSFDTNAVVIVSIIILVALFSIQKFGTGKVGFMFAPVLALWFLSLGSIGIYNLVKYDLTVVRALNPAYIYLFFKKNSNNAWSALGGCILCVTGAEAMFADLGHFTVPAIQIAFTFVVFPCLLLAYMGQAAYLMKHPDSAARIFYDSVPASLFWPVFVTATLAAMIASQAMISATFSCVKQSMALGCFPRMKIVHTSKRRMGQIYIPVINWFLMIMCIFVVAIFRSTTDIANAYGIAEVGVMLASTVLVTVVMLLIWQTNLFLALCFPLVFGSVELIYMSAVLSKISEGGWLPLAFASIFLSVMYTWNFGSVLKYQSEVREKISMDFLLELGSTLGTVRVPGIGLLYNELVQGIPAIFGQFLLSLPAIHSTIMFVCIKYVPIPVVPQEERFLFRRVGPKDYHMFRCIVRYGYKDVRKEDHHAFEQLLMESLEKFLRKEAQDLALESNLNELEIDNISERSRYSPTPSVINVNEELRIPLMEEARTLSSEETVGVQLPSSIMASDDDPSLEYELSALREAMDSGFTYLLAQGDVRAKKNSFFIKKLVINYFYAFLRRNCRGGAATMRVPHMNIMQVGMTYMV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17885 23797 + Sed0005635.1 Sed13g0001 733511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0001 838 Pfam K+ potassium transporter C-terminal domain 598 836 IPR053952 -
Sed13g0001 838 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 79 838 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed13g0001 838 NCBIfam potassium uptake protein 97 838 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed13g0001 838 MobiDBLite consensus disorder prediction 1 48 - -
Sed13g0001 838 MobiDBLite consensus disorder prediction 16 44 - -
Sed13g0001 838 Pfam K+ potassium transporter integral membrane domain 98 586 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1933 Sed-Chr11:33739172 Sed13g0001 Sed-Chr13:17885 3.30E-188 dispersed
Sed12g1143 Sed-Chr12:7537722 Sed13g0001 Sed-Chr13:17885 5.30E-191 dispersed
Sed12g1144 Sed-Chr12:7537722 Sed13g0001 Sed-Chr13:17885 2.30E-143 dispersed
Sed13g0001 Sed-Chr13:17885 Sed13g0336 Sed-Chr13:2268690 2.80E-257 dispersed
Sed13g0001 Sed-Chr13:17885 Sed13g0002 Sed-Chr13:17885 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0001 K03549 - csv:101202804 1458.74