Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0002 ATGTCTGCTGTGAGTGGTCTGCAGGGACAGATAAAGTCATTTGATACGAATGCTGTTGTCATTGTTTCAATTATAATCCTTGTGGCCTTGTTCAGCATACAGAAATTTGGGACCGGGAAAGTAGGATTTATGTTTGCTCCTGTGCTTGCTTTGTGGTTTCTTAGTCTGGGATCTATTGGAATTTACAATCTAGTGAAGTATGATCTCACCGTTGTAAGGGCTCTCAATCCCGCTTACATCTATTTATTCTTTAAGAAAAATTCAAATAATGCCTGGTCAGCTCTCGGTGGTTGTATTTTGTGTGTAACAGGAGCTGAAGCAATGTTTGCTGATCTGGGCCATTTCACTGTGCCAGCCATACAGATTGCCTTCACATTTGTTGTTTTCCCCTGCCTTCTATTGGCTTATATGGGCCAGGCTGCATACCTTATGAAACATCCAGATTCTGCAGCAAGAATATTTTATGATTCTGTGCCAGCAAGTCTTTTTTGGCCAGTCTTTGTGACAGCAACACTTGCTGCTATGATTGCAAGCCAAGCAATGATATCTGCAACCTTTTCTTGTGTCAAGCAATCTATGGCTCTTGGATGTTTTCCGAGAATGAAGATAGTTCACACTTCTAAGAGACGAATGGGTCAAATTTACATCCCTGTGATCAATTGGTTTTTGATGATAATGTGCATATTTGTCGTTGCAATATTTCGAAGTACTACAGACATTGCCAATGCTTATGGTATTGCTGAAGTTGGTGTGATGCTGGCGAGCACTGTCCTGGTTACTGTAGTAATGCTTCTGATCTGGCAGACAAATTTGTTTCTTGCGTTGTGTTTTCCACTTGTATTTGGGTCAGTCGAGTTAATCTACATGTCTGCAGTGTTATCAAAAATCAGCGAGGGCGGGTGGTTGCCACTTGCTTTTGCTTCTATCTTTCTCTCTGTGATGTACACATGGAACTTTGGGAGCGTGTTGAAGTATCAAAGTGAGGTGAGAGAGAAGATATCAATGGATTTCTTGCTTGAACTGGGATCTACCCTCGGAACTGTAAGAGTTCCAGGAATTGGTCTCCTCTACAATGAGCTTGTCCAAGGCATTCCTGCAATTTTTGGGCAATTTCTTCTTAGCCTTCCAGCCATCCACTCCACAATTATGTTTGTGTGCATCAAATATGTTCCAATCCCAGTGGTTCCGCAAGAGGAAAGGTTTTTGTTTAGAAGGGTTGGCCCAAAAGATTACCATATGTTTCGCTGCATCGTGAGATATGGTTACAAGGATGTGCGGAAGGAAGATCATCATGCATTTGAGCAACTTTTGATGGAAAGCCTCGAGAAGTTCTTAAGAAAGGAGGCTCAAGATCTTGCTCTGGAGAGCAACTTGAATGAGTTGGAAATTGATAACATTTCAGAGAGGTCGCGATATTCTCCAACTCCGAGTGTTATCAATGTGAATGAGGAGCTGAGAATTCCATTGATGGAAGAGGCAAGAACATTGAGTTCGGAAGAAACCGTTGGGGTGCAGTTGCCATCCAGCATTATGGCATCTGATGACGACCCTAGTTTGGAGTATGAGCTATCAGCCCTTCGGGAAGCAATGGATTCAGGATTTACATATCTACTGGCACAGGGGGATGTCCGAGCGAAGAAAAACTCATTTTTTATCAAGAAGCTTGTTATTAACTATTTCTATGCATTCCTAAGGAGGAACTGTAGGGGTGGTGCAGCCACAATGCGAGTTCCACATATGAATATCATGCAAGTTGGGATGACTTACATGGTCTGA 1776 42.4 MSAVSGLQGQIKSFDTNAVVIVSIIILVALFSIQKFGTGKVGFMFAPVLALWFLSLGSIGIYNLVKYDLTVVRALNPAYIYLFFKKNSNNAWSALGGCILCVTGAEAMFADLGHFTVPAIQIAFTFVVFPCLLLAYMGQAAYLMKHPDSAARIFYDSVPASLFWPVFVTATLAAMIASQAMISATFSCVKQSMALGCFPRMKIVHTSKRRMGQIYIPVINWFLMIMCIFVVAIFRSTTDIANAYGIAEVGVMLASTVLVTVVMLLIWQTNLFLALCFPLVFGSVELIYMSAVLSKISEGGWLPLAFASIFLSVMYTWNFGSVLKYQSEVREKISMDFLLELGSTLGTVRVPGIGLLYNELVQGIPAIFGQFLLSLPAIHSTIMFVCIKYVPIPVVPQEERFLFRRVGPKDYHMFRCIVRYGYKDVRKEDHHAFEQLLMESLEKFLRKEAQDLALESNLNELEIDNISERSRYSPTPSVINVNEELRIPLMEEARTLSSEETVGVQLPSSIMASDDDPSLEYELSALREAMDSGFTYLLAQGDVRAKKNSFFIKKLVINYFYAFLRRNCRGGAATMRVPHMNIMQVGMTYMV 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17885 23797 + Sed0005635.2 Sed13g0002 733512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0002 591 Pfam K+ potassium transporter integral membrane domain 1 339 IPR053951 -
Sed13g0002 591 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 591 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed13g0002 591 Pfam K+ potassium transporter C-terminal domain 351 589 IPR053952 -
Sed13g0002 591 NCBIfam potassium uptake protein 1 591 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0002 Sed-Chr13:17885 Sed13g0336 Sed-Chr13:2268690 7.90E-190 dispersed
Sed13g0001 Sed-Chr13:17885 Sed13g0002 Sed-Chr13:17885 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0002 K03549 - csv:101202804 1085.48