Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0025 | ATGGCGGGCCATAGCGACGAGGAAGCTCAGCTGTTCGCAATGCAGTTAGCCAGCGCTTCGGTCCTTCCGATGACGCTGAAGGCGGCCATCGAGCTGGACGTGCTCGAGATCATCGCCACGGCCGGGGAGGGGGCGATGCTTTCCCCCTCACAAATCGCCTCTCGGCTCCCGAACAACACAAACCCGGAGGCCCATGTGGTGCTGGACCGCATCCTCCGCCTCCTTGCCGCCTACTCCATCCTCAATTACTCCCTCAAAACCCTCCCGGATGGCTCCGTCCACACGCTGTACGGCCTCGCCCCTCTCTCCAAATACTTCGTCAAGAATCAGGACGGCGTTTCCATTGCTCCCCTCTGTCTCATGAACCAGGACAAGGTCCTCATGGAAAGCTGGTACCATTTGAAAGATGCTGTACTTAAAGGAGGGATTCCATTCAACAAAGCGTATGGAATGACGGCGTTTGAATACCATGGAACGGATCCGAGATTCAACAAGGTGTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTTGACACCTACAAGGGCTTCGAAGGCCTTAATTCTGTGGTCGATGTCGGCGGTGGGACGGGAGCTGTTCTCAGCATGATAGTATCCAAGTACCCTTCTATCAAAGGAATCAACTTCGACCTCCCTCATGTCATTGAGGATGCCCCTGCACTACCAGGGGTCCAACATGTTGGGGGTGATATGTTTGTGAGCATCCCAAAGGGAGATGCTATATTCATGAAATGGATTTGCCACGATTGGAGCGACCAACACTGCCTCAAATTCCTGAAGCATTGCTATGATGCGCTGCCCGAGCATGGAAAGGTGATCGTGGTCGAGTGCATTCTTCCGGTTGCACCGGACACTAGCCTTGCCACCAAGTGCGTTGTTCACATTGATGTCATCATGTTGGCTCACAACCCTGGAGGTAAAGAGAGGACCGAGGATGAGTTCCGAGCCTTGGCCAATGCCGTTGGATTTCAAGGTTTCAAGGTCCATTGTTGTGCTTTTAACACTTACGTCATGGAATTTCTCAAGACCGTTTAG | 1071 | 52.75 | MAGHSDEEAQLFAMQLASASVLPMTLKAAIELDVLEIIATAGEGAMLSPSQIASRLPNNTNPEAHVVLDRILRLLAAYSILNYSLKTLPDGSVHTLYGLAPLSKYFVKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLKGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKILDTYKGFEGLNSVVDVGGGTGAVLSMIVSKYPSIKGINFDLPHVIEDAPALPGVQHVGGDMFVSIPKGDAIFMKWICHDWSDQHCLKFLKHCYDALPEHGKVIVVECILPVAPDTSLATKCVVHIDVIMLAHNPGGKERTEDEFRALANAVGFQGFKVHCCAFNTYVMEFLKTV | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 160330 | 163463 | + | Sed0005827.1 | Sed13g0025 | 733535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0025 | 356 | PIRSF | O-mtase | 2 | 354 | IPR016461 | GO:0008168(InterPro) | |
Sed13g0025 | 356 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 106 | - | - | |
Sed13g0025 | 356 | PANTHER | O-METHYLTRANSFERASE | 8 | 343 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
Sed13g0025 | 356 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 14 | 354 | IPR016461 | GO:0008168(InterPro) | |
Sed13g0025 | 356 | Pfam | O-methyltransferase domain | 131 | 336 | IPR001077 | GO:0008171(InterPro) | |
Sed13g0025 | 356 | Gene3D | Vaccinia Virus protein VP39 | 107 | 354 | IPR029063 | - | |
Sed13g0025 | 356 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 111 | 352 | IPR029063 | - | |
Sed13g0025 | 356 | CDD | AdoMet_MTases | 195 | 287 | - | - | |
Sed13g0025 | 356 | FunFam | Caffeic acid O-methyltransferase | 107 | 354 | - | - | |
Sed13g0025 | 356 | SUPERFAMILY | Winged helix DNA-binding domain | 4 | 109 | IPR036390 | - | |
Sed13g0025 | 356 | Gene3D | - | 1 | 106 | IPR036388 | - | |
Sed13g0025 | 356 | Pfam | Dimerisation domain | 24 | 76 | IPR012967 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1416 | Sed-Chr4:28671762 | Sed13g0025 | Sed-Chr13:160330 | 6.50E-62 | dispersed | |
Sed08g2895 | Sed-Chr8:40014882 | Sed13g0025 | Sed-Chr13:160330 | 1.10E-101 | dispersed | |
Sed08g2896 | Sed-Chr8:40014882 | Sed13g0025 | Sed-Chr13:160330 | 1.10E-101 | dispersed | |
Sed08g2897 | Sed-Chr8:40024012 | Sed13g0025 | Sed-Chr13:160330 | 1.80E-29 | dispersed | |
Sed13g0025 | Sed-Chr13:160330 | Sed01g0671 | Sed-Chr1:4915564 | 2.50E-58 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0025 | K13066 | - | csv:101204109 | 619.772 |