Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0025 ATGGCGGGCCATAGCGACGAGGAAGCTCAGCTGTTCGCAATGCAGTTAGCCAGCGCTTCGGTCCTTCCGATGACGCTGAAGGCGGCCATCGAGCTGGACGTGCTCGAGATCATCGCCACGGCCGGGGAGGGGGCGATGCTTTCCCCCTCACAAATCGCCTCTCGGCTCCCGAACAACACAAACCCGGAGGCCCATGTGGTGCTGGACCGCATCCTCCGCCTCCTTGCCGCCTACTCCATCCTCAATTACTCCCTCAAAACCCTCCCGGATGGCTCCGTCCACACGCTGTACGGCCTCGCCCCTCTCTCCAAATACTTCGTCAAGAATCAGGACGGCGTTTCCATTGCTCCCCTCTGTCTCATGAACCAGGACAAGGTCCTCATGGAAAGCTGGTACCATTTGAAAGATGCTGTACTTAAAGGAGGGATTCCATTCAACAAAGCGTATGGAATGACGGCGTTTGAATACCATGGAACGGATCCGAGATTCAACAAGGTGTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTTGACACCTACAAGGGCTTCGAAGGCCTTAATTCTGTGGTCGATGTCGGCGGTGGGACGGGAGCTGTTCTCAGCATGATAGTATCCAAGTACCCTTCTATCAAAGGAATCAACTTCGACCTCCCTCATGTCATTGAGGATGCCCCTGCACTACCAGGGGTCCAACATGTTGGGGGTGATATGTTTGTGAGCATCCCAAAGGGAGATGCTATATTCATGAAATGGATTTGCCACGATTGGAGCGACCAACACTGCCTCAAATTCCTGAAGCATTGCTATGATGCGCTGCCCGAGCATGGAAAGGTGATCGTGGTCGAGTGCATTCTTCCGGTTGCACCGGACACTAGCCTTGCCACCAAGTGCGTTGTTCACATTGATGTCATCATGTTGGCTCACAACCCTGGAGGTAAAGAGAGGACCGAGGATGAGTTCCGAGCCTTGGCCAATGCCGTTGGATTTCAAGGTTTCAAGGTCCATTGTTGTGCTTTTAACACTTACGTCATGGAATTTCTCAAGACCGTTTAG 1071 52.75 MAGHSDEEAQLFAMQLASASVLPMTLKAAIELDVLEIIATAGEGAMLSPSQIASRLPNNTNPEAHVVLDRILRLLAAYSILNYSLKTLPDGSVHTLYGLAPLSKYFVKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLKGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKILDTYKGFEGLNSVVDVGGGTGAVLSMIVSKYPSIKGINFDLPHVIEDAPALPGVQHVGGDMFVSIPKGDAIFMKWICHDWSDQHCLKFLKHCYDALPEHGKVIVVECILPVAPDTSLATKCVVHIDVIMLAHNPGGKERTEDEFRALANAVGFQGFKVHCCAFNTYVMEFLKTV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 160330 163463 + Sed0005827.1 Sed13g0025 733535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0025 356 PIRSF O-mtase 2 354 IPR016461 GO:0008168(InterPro)
Sed13g0025 356 FunFam Caffeic acid 3-O-methyltransferase 1 106 - -
Sed13g0025 356 PANTHER O-METHYLTRANSFERASE 8 343 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Sed13g0025 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 354 IPR016461 GO:0008168(InterPro)
Sed13g0025 356 Pfam O-methyltransferase domain 131 336 IPR001077 GO:0008171(InterPro)
Sed13g0025 356 Gene3D Vaccinia Virus protein VP39 107 354 IPR029063 -
Sed13g0025 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 352 IPR029063 -
Sed13g0025 356 CDD AdoMet_MTases 195 287 - -
Sed13g0025 356 FunFam Caffeic acid O-methyltransferase 107 354 - -
Sed13g0025 356 SUPERFAMILY Winged helix DNA-binding domain 4 109 IPR036390 -
Sed13g0025 356 Gene3D - 1 106 IPR036388 -
Sed13g0025 356 Pfam Dimerisation domain 24 76 IPR012967 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1416 Sed-Chr4:28671762 Sed13g0025 Sed-Chr13:160330 6.50E-62 dispersed
Sed08g2895 Sed-Chr8:40014882 Sed13g0025 Sed-Chr13:160330 1.10E-101 dispersed
Sed08g2896 Sed-Chr8:40014882 Sed13g0025 Sed-Chr13:160330 1.10E-101 dispersed
Sed08g2897 Sed-Chr8:40024012 Sed13g0025 Sed-Chr13:160330 1.80E-29 dispersed
Sed13g0025 Sed-Chr13:160330 Sed01g0671 Sed-Chr1:4915564 2.50E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0025 K13066 - csv:101204109 619.772