Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0030 ATGAGCTCGTTTGCACTGGGAAAGAGCAGCAGCACTGCTATCTTCTTGGTTTTCATTTCCTTTTTTACAGCTCTGAATGATCTGTGCACATTATTAATTTCTGTGGACGCCAAAAGCAACGTGTACATTGTTTATTTGGGCAACAAACCACATGATAATGAAGAGTTGTTGGTAAAGACCCATCATGGAGTTCTTGCCTCTGTCCTTGGGAGCCAAGAGGCATCTGCAGATTCTATGGTATATAGCTATAAACATGGATTTTCTGGTTTTGCAGCAAAGCTTACCATGGCTCAAGCACAAATGATCTCGGAGTTGCCTTCAGTGGTTAAAGTCATACCCAATCGTCTTCACAAGATGCAAACCACCAGGAGCTGGGACTACCTTCAACTATCCCCACGATTTCCTAACTCTCTGTTACAGAAATCAAGAATGGGGAATGGTGCCATCATTGGCCTCCTTGATACAGGAATCTGGCCTGAAGCTGAAGTTTTCAGTGATGACGGTCTGGGGCCTATTCCCTCAAGGTGGAAAGGTATCTGCGAGGCAGGAGAGCTTTTCAATCCAGCAACGGCGTGTAGCAGAAAACTAATTGGAGCCCGATATTTCATCAAGGGGCTGGAAGCTTCATATGGACATTCATACAATTATAGTGGGCTCCAAGATTACTTGTCCCCGAGAGATTACTCAGGGCATGGCACACACGTCTCGTCAGTTGCCAGTGGTTCCTTTGTACCCAATGTTAGTTACCACGGCCTAGCTGTTGGAACAGTTAGGGGTGGTGCACCCCAGTCTCGGCTTGCCATGTATAAAGTTTGTTGGCGACTGAATGGAGGAGTATGCTCAGACATAGACTTACTCAAGGCCATCGACCAAGCGATATATGATGGTGTAGATGTGCTATCTCTGTCCCTTGGTCCTACCTTTCCTTCATATTTTGATATTGACATGAACAATGGGATTGCAATTGGCGCATTTCATGCTGTAGCAAAGGGGATTGTCGTTGTTGGTGCAGCTGGAAATTCTGGTCCAGCAGCTTACTCTGTAGGTAATCTAGAACCGTGGTTGTTTACGGTCGCTGCAAGCTCTGTGGACCGTTCATTCTTAGTAGAGATTACATTGGGAAACAACTGGACTACCGTGGGACAAGGGATGTTCAGCGGAAAATTGACGAGGTTTCGTAATTTACTGTATCCTGAGGTCTCTGATCTGGATGATCAACGTGCCTGCGAATCTCTATCCTTAAATGATACATGGGCAGCTGGAAATGTGGTTTTGTGTTTCGCATCAGATGATTATGATGACAATGCATATAATACTTCTTGGTTCGTCAAAAAAGTTGGTGGGTTGGGGCTTATTGTAGCCAAGAATCCTACCAAGTCTGTCGGACCATTCATTAACAACTTCCCATGTGTTCAAATAAGCCTTGATATTGGAATGCAGATACTCAACTATATTCGTTCTACCAGAAATCCTCAAGTCAAGATTGGTCCTTTAACAACACGTGTCGGTCACTCATTGTCCACCACGGTGGCCTACTTTTCATCTCGAGGACCTAATTCCATTGCTCCAGCTCTTCTGAAGCCAGATATTGCGGCTCCAGGCGTTGCTATTTTGGCTGCTGTTCCTCTCTCTGACCCAAAGGAAAGAAATTCATATGCTTTTATGTCTGGGACATCCATGGCAACTCCTCATGTATCAGCCATTGTTGCCCTTCTCAAATCATTGTACCCACATTGGTCCCCTGCTGCAATTAAGTCGGCCATAGTTACAACCGCCTGGACTTCGGATCCATATGGTGAAGTAATATTTGCAGAGGGACGACCAATGAAGTTTGCCGGTCCTTTTGATTTTGGAGGTGGAATTGTGAACCCTAATAAAGCAGTGGACCCTGGTCTCGTATATGATATGGGAATGGCGGAATATTTTCAGTATTTCTGTGCCATGGGCTACAACAACTCTGCCATTTCGGTGATCACCAAGAAGTTCAAATCTTGCCCCGAAAGACGGCCATCTATTTTGGATGTAAACGTACCATCCATAACGATTCCGTGGCTTAGACACTCAGTAAGTCTCACCAGAATTGTCACAAATGTGGGTTCAGTCAATTCCACATACAAGGCTGCTATTGAGCCCCCGCCCGGTGTAACCATAGTTGTGAAGCCTCCGATAATAAAATTCAACCACAAGATGAAGAGAATCCCCTTCACCGTTACGGTCTCTTCTAATCACAGAGTGTCAACCGGATACTGTTTTGGAAGCTTGACTTGGCTGGATGGAGTTCATTCGGTTAGAATCCCAATATCTGTAAGAACTAACACTTGA 2322 45.05 MSSFALGKSSSTAIFLVFISFFTALNDLCTLLISVDAKSNVYIVYLGNKPHDNEELLVKTHHGVLASVLGSQEASADSMVYSYKHGFSGFAAKLTMAQAQMISELPSVVKVIPNRLHKMQTTRSWDYLQLSPRFPNSLLQKSRMGNGAIIGLLDTGIWPEAEVFSDDGLGPIPSRWKGICEAGELFNPATACSRKLIGARYFIKGLEASYGHSYNYSGLQDYLSPRDYSGHGTHVSSVASGSFVPNVSYHGLAVGTVRGGAPQSRLAMYKVCWRLNGGVCSDIDLLKAIDQAIYDGVDVLSLSLGPTFPSYFDIDMNNGIAIGAFHAVAKGIVVVGAAGNSGPAAYSVGNLEPWLFTVAASSVDRSFLVEITLGNNWTTVGQGMFSGKLTRFRNLLYPEVSDLDDQRACESLSLNDTWAAGNVVLCFASDDYDDNAYNTSWFVKKVGGLGLIVAKNPTKSVGPFINNFPCVQISLDIGMQILNYIRSTRNPQVKIGPLTTRVGHSLSTTVAYFSSRGPNSIAPALLKPDIAAPGVAILAAVPLSDPKERNSYAFMSGTSMATPHVSAIVALLKSLYPHWSPAAIKSAIVTTAWTSDPYGEVIFAEGRPMKFAGPFDFGGGIVNPNKAVDPGLVYDMGMAEYFQYFCAMGYNNSAISVITKKFKSCPERRPSILDVNVPSITIPWLRHSVSLTRIVTNVGSVNSTYKAAIEPPPGVTIVVKPPIIKFNHKMKRIPFTVTVSSNHRVSTGYCFGSLTWLDGVHSVRIPISVRTNT 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 191029 194777 - Sed0020314.1 Sed13g0030 733540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0030 773 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Sed13g0030 773 PRINTS Subtilisin serine protease family (S8) signature 556 572 IPR015500 -
Sed13g0030 773 PRINTS Subtilisin serine protease family (S8) signature 227 240 IPR015500 -
Sed13g0030 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 557 567 IPR023828 -
Sed13g0030 773 Pfam Fibronectin type-III domain 674 769 IPR041469 -
Sed13g0030 773 SUPERFAMILY Subtilisin-like 18 696 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed13g0030 773 ProSiteProfiles Serine proteases, subtilase domain profile. 124 628 - -
Sed13g0030 773 Gene3D - 364 502 - -
Sed13g0030 773 ProSitePatterns Serine proteases, subtilase family, histidine active site. 231 241 IPR022398 -
Sed13g0030 773 Gene3D - 645 772 - -
Sed13g0030 773 FunFam p69E protein-like 645 772 - -
Sed13g0030 773 CDD PA_subtilisin_like 371 495 - -
Sed13g0030 773 FunFam Subtilisin-like protease SBT5.3 31 120 - -
Sed13g0030 773 Pfam Peptidase inhibitor I9 41 116 IPR010259 -
Sed13g0030 773 Gene3D Peptidase S8/S53 domain 148 641 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed13g0030 773 FunFam Subtilisin-like protease SBT1.5 147 373 - -
Sed13g0030 773 Pfam Subtilase family 145 592 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed13g0030 773 FunFam subtilisin-like protease SBT1.5 364 502 - -
Sed13g0030 773 CDD Peptidases_S8_3 117 593 IPR034197 -
Sed13g0030 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 32 120 IPR037045 -
Sed13g0030 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 42 767 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1613 Sed-Chr7:13389269 Sed13g0030 Sed-Chr13:191029 1.10E-175 dispersed
Sed07g1614 Sed-Chr7:13470038 Sed13g0030 Sed-Chr13:191029 1.90E-204 dispersed
Sed13g0030 Sed-Chr13:191029 Sed13g0205 Sed-Chr13:1331968 1.60E-118 dispersed
Sed13g0030 Sed-Chr13:191029 Sed03g1334 Sed-Chr3:8497376 7.70E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0030 - - - 0.0