Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0045 ATGGCTTTGGTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGCTCCACCATGGCTCAGCCTCCAAACCCACTAAAACAAATCTGCTCACTTTAAGAAGAAAGAGCCGATGCTGCTCTGCCATAGCCATTGATGCTCCATCTTCTTTGGCAGACGCTGCTGGAATCAGATGGGGTTCGACTACTTTGCAAGGATTAAGGGAAGAAATGGAGGACGATGCTGTTGTGAAGTCTGATGGTCTTAATGGCTTCTTTTTTGCTGCAGTCTTTGATGGCCATGGTGGCTATTTCTCCGCCAAGTTTCTCAGGGAAGAGCTGTACAAGGAGTGCGTAACAGCTTTACAAGGTGGCCTGCTGTTGAATGGAGAGAGTTTTGAAGTGATAAAAGTGGCTTTGGAGAAGGCTTTTGATGATACTGATAAAAGATTACTCCTTTTGCTTGAGGCAGATGGGAAAGGAGATGAATCTGGTTCTACTGCAACTGCTGCATTCATTCGAAAAGACGTTATGTTCATTTCACATATCGGTGACTCTTGTGTTGTCTTGTCGCGTTCCGGAAGAGCAGAGGTGTTGACTAGTTCTCATCGGCCCTATGGAAACAACAGCACCTCACTGCAAGAAGTTAGAAGAGTTAGAGAAGCAGGTGGATGGATAACTAACGGGAGAATATGTGGAGACATCTCTGTATCTCGTGCATTTGGCGACATACGATTCAAGACTAAGAAATACGAGATGGTAAAAAAAGGAGTTGCAGAAGGGAGATGGTCTGAAAAATTTGTTTCTCGTGTACAGTTTAATGGAGATTTGATTACTGCATCACCAGAAACTTTTCAAGTAAATCTTGGATCAAATGTTGAGTTTATACTGATAGCATCGGATGGCCTATGGGATTACATGAAGAGCTCCGATGCGGTTAAGTTTGTCCGGAATCAACTTAGGCAGCATGGTGATGTTCAGCTAGCTTGTGAAGCCCTCGCGCAAGCTGCCTTGGATCAAGGTTCACAAGACAATATTAGCATTATCATGGCTGATTTAGGGCGAACAGATTGGAAGAATTTGCCTCTTAAGAAAGACAATGTCATATTTGAACTGGCGCAAGCTTTTGCTACGATCGGGGTCGTTTCTTTCGGTATTTGGTGGGCGTCCTCTGCCTTCTCTCTTTAA 1164 44.33 MALVSPRLHRFRLTKLHHGSASKPTKTNLLTLRRKSRCCSAIAIDAPSSLADAAGIRWGSTTLQGLREEMEDDAVVKSDGLNGFFFAAVFDGHGGYFSAKFLREELYKECVTALQGGLLLNGESFEVIKVALEKAFDDTDKRLLLLLEADGKGDESGSTATAAFIRKDVMFISHIGDSCVVLSRSGRAEVLTSSHRPYGNNSTSLQEVRRVREAGGWITNGRICGDISVSRAFGDIRFKTKKYEMVKKGVAEGRWSEKFVSRVQFNGDLITASPETFQVNLGSNVEFILIASDGLWDYMKSSDAVKFVRNQLRQHGDVQLACEALAQAALDQGSQDNISIIMADLGRTDWKNLPLKKDNVIFELAQAFATIGVVSFGIWWASSAFSL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 297415 302065 - Sed0016509.1 Sed13g0045 733555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0045 387 CDD PP2Cc 56 345 IPR001932 -
Sed13g0045 387 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Sed13g0045 387 SUPERFAMILY PP2C-like 55 346 IPR036457 -
Sed13g0045 387 Gene3D - 56 352 IPR036457 -
Sed13g0045 387 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Sed13g0045 387 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Sed13g0045 387 PANTHER PROTEIN PHOSPHATASE 2C 55 344 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed13g0045 387 FunFam Protein phosphatase 2C 57 56 352 - -
Sed13g0045 387 SMART PP2C_4 47 343 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0045 Sed-Chr13:297415 Sed05g1813 Sed-Chr5:31743957 4.70E-26 dispersed
Sed13g0045 Sed-Chr13:297415 Sed13g0046 Sed-Chr13:297415 4.60E-215 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0045 K04457 - csv:101218076 660.988