Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0046 ATGGCTTTGGTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGCTCCACCATGGCTCAGCCTCCAAACCCACTAAAACAAATCTGCTCACTTTAAGAAGAAAGAGCCGATGCTGCTCTGCCATAGCCATTGATGCTCCATCTTCTTTGGCAGACGCTGCTGGAATCAGATGGGGTTCGACTACTTTGCAAGGATTAAGGGAAGAAATGGAGGACGATGCTGTTGTGAAGTCTGATGGTCTTAATGGCTTCTTTTTTGCTGCAGTCTTTGATGGCCATGGTGGCTATTTCTCCGCCAAGTTTCTCAGGGAAGAGCTGTACAAGGAGTGCGTAACAGCTTTACAAGGTGGCCTGCTGTTGAATGGAGAGAGTTTTGAAGTGATAAAAGTGGCTTTGGAGAAGGCTTTTGATGATACTGATAAAAGATTACTCCTTTTGCTTGAGGCAGATGGGAAAGGAGATGAATCTGGTTCTACTGCAACTGCTGCATTCATTCGAAAAGACGTTATGTTCATTTCACATATCGGTGACTCTTGTGTTGTCTTGTCGCGTTCCGGAAGAGCAGAGGTGTTGACTAGTTCTCATCGGCCCTATGGAAACAACAGCACCTCACTGCAAGAAGTTAGAAGAGTTAGAGAAGCAGGTGGATGGATAACTAACGGGAGAATATGTGGAGACATCTCTGTATCTCGTGCATTTGGCGACATACGATTCAAGACTAAGAAATACGAGATGGTAAAAAAAGGAGTTGCAGAAGGGAGATGGTCTGAAAAATTTGTTTCTCGTGTACAGTTTAATGGAGATTTGATTACTGCATCACCAGAAACTTTTCAAGTAAATCTTGGATCAAATGTTGAGTTTATACTGATAGCATCGGATGGCCTATGGGATTACATGAAGAGCTCCGATGCGGTTAAGTTTGTCCGGAATCAACTTAGGCAGCATGGTGATGTTCAGGTGTATATTATGTTACTTGTATTCTTTTACACACTACTTGAGTGCACCTTCTGTCAATTAGTGTATCCGTTTTTATTGTGGTTCAACTTCCAACTTCTCATTTACTTTGATTTTCAGCTAGCTTGTGAAGCCCTCGCGCAAGCTGCCTTGGATCAAGGTTCACAAGACAATATTAGCATTATCATGGCTGATTTAGGGCGAACAGATTGGAAGAATTTGCCTCTTAAGAAAGACAATGTCATATTTGAACTGGCGCAAGCTTTTGCTACGATCGGGGTCGTTTCTTTCGGTATTTGGTGGGCGTCCTCTGCCTTCTCTCTTTAA 1281 43.25 MALVSPRLHRFRLTKLHHGSASKPTKTNLLTLRRKSRCCSAIAIDAPSSLADAAGIRWGSTTLQGLREEMEDDAVVKSDGLNGFFFAAVFDGHGGYFSAKFLREELYKECVTALQGGLLLNGESFEVIKVALEKAFDDTDKRLLLLLEADGKGDESGSTATAAFIRKDVMFISHIGDSCVVLSRSGRAEVLTSSHRPYGNNSTSLQEVRRVREAGGWITNGRICGDISVSRAFGDIRFKTKKYEMVKKGVAEGRWSEKFVSRVQFNGDLITASPETFQVNLGSNVEFILIASDGLWDYMKSSDAVKFVRNQLRQHGDVQVYIMLLVFFYTLLECTFCQLVYPFLLWFNFQLLIYFDFQLACEALAQAALDQGSQDNISIIMADLGRTDWKNLPLKKDNVIFELAQAFATIGVVSFGIWWASSAFSL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 297415 302065 - Sed0016509.2 Sed13g0046 733556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0046 426 Gene3D - 56 390 IPR036457 -
Sed13g0046 426 SUPERFAMILY PP2C-like 55 385 IPR036457 -
Sed13g0046 426 Pfam Protein phosphatase 2C 59 376 IPR001932 -
Sed13g0046 426 CDD PP2Cc 56 384 IPR001932 -
Sed13g0046 426 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Sed13g0046 426 ProSiteProfiles PPM-type phosphatase domain profile. 57 384 IPR001932 -
Sed13g0046 426 SMART PP2C_4 47 382 IPR001932 -
Sed13g0046 426 PANTHER PROTEIN PHOSPHATASE 2C 55 383 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0046 Sed-Chr13:297415 Sed13g1941 Sed-Chr13:24319361 7.00E-23 dispersed
Sed13g0045 Sed-Chr13:297415 Sed13g0046 Sed-Chr13:297415 4.60E-215 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0046 K04457 - csv:101218076 646.736