Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0065 ATGGATTTGGAGAGTATTGAGTGTGTGTCATCTTCTGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCTCATCATCATCATCATCATTCGGAGTTGTCGGCGACGAAGCCGCCTCGTAATGGAAGCAACAACAGTGCTGTTACAGCCCCCACTGCCACTGCCCCTGCCACTAGCGTCCATGATTTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGCTCTACATGTAAAACGCGGGTTCATAATCGCTGCCCTACATGTAGACAAGAGCTTGGAGATATTAGATGCTTGGCACTGGAGAAGGTAGCGGAGTCGCTGGAATTTCCTTGCAAGTATTATTCCTTGGGATGCCCAGAAATATTTCCATATTACAGTAAACTTAAGCACGAGGCTTTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGGTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAAGTAGAGAATGCCACTTGGATGCTTACTGTCTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTCGGAGGGTACGGGCGAAAACTAATATGGGAGGGCACCCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCACGATGGACTAATCATTCAAAGAAATATGGCTCTTTTCTTTTCTGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTCACAGGAAGGATATGGAAAGAACAGAACCCCGATGGCGGAGTTTGCATACCGAACCTGTGTAGCTAG 1002 47.31 MDLESIECVSSSDGLDEDEIHLHHTLHPYSHHHHHHSELSATKPPRNGSNNSAVTAPTATAPATSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLEFPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDGGVCIPNLCS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 382241 386269 + Sed0016791.1 Sed13g0065 733575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0065 333 FunFam E3 ubiquitin-protein ligase SINAT3 11 123 - -
Sed13g0065 333 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Sed13g0065 333 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 72 107 IPR049548 -
Sed13g0065 333 Pfam Sina, zinc finger 121 196 - -
Sed13g0065 333 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270(InterPro)
Sed13g0065 333 MobiDBLite consensus disorder prediction 42 56 - -
Sed13g0065 333 FunFam E3 ubiquitin-protein ligase SINAT3 124 180 - -
Sed13g0065 333 SUPERFAMILY TRAF domain-like 125 317 - -
Sed13g0065 333 CDD RING-HC_SIAHs 70 108 - -
Sed13g0065 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 313 IPR008974 GO:0005515(InterPro)
Sed13g0065 333 CDD Sina 186 314 - -
Sed13g0065 333 FunFam E3 ubiquitin-protein ligase SINAT5-like 181 313 - -
Sed13g0065 333 SUPERFAMILY RING/U-box 60 111 - -
Sed13g0065 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 178 IPR013083 -
Sed13g0065 333 MobiDBLite consensus disorder prediction 28 56 - -
Sed13g0065 333 Pfam Sina, TRAF-like domain 216 313 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed13g0065 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 124 IPR013083 -
Sed13g0065 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 41 315 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0857 Sed-Chr7:6251036 Sed13g0065 Sed-Chr13:382241 3.70E-187 dispersed
Sed09g0524 Sed-Chr9:5272622 Sed13g0065 Sed-Chr13:382241 5.40E-142 dispersed
Sed09g0525 Sed-Chr9:5272622 Sed13g0065 Sed-Chr13:382241 1.00E-126 dispersed
Sed11g1562 Sed-Chr11:31199015 Sed13g0065 Sed-Chr13:382241 3.20E-134 dispersed
Sed11g1563 Sed-Chr11:31199015 Sed13g0065 Sed-Chr13:382241 3.20E-134 dispersed
Sed13g0065 Sed-Chr13:382241 Sed14g0199 Sed-Chr14:2257595 3.00E-130 dispersed
Sed13g0065 Sed-Chr13:382241 Sed07g0856 Sed-Chr7:6251036 5.80E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0065 K04506 - csv:101215696 640.958