Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0067 ATGGCCTATCACCGCCTCAACTCCGGCGACATCTCCGGCAACAAAACCCCAAAACGCCTCCTCTTCGTCCTCCTCCTGCTCTGCCTCACCGTGGCCGTGGCGTCCTCTACCCGACCCGACCCGGGAGAAGCAATTTTGAAGGCCTGCAGGCGAACCCGGTTCCGGAAGCTGTGCGTGAAATCGTTCCAGAATTCCCCAGAATCGGCGACCGCGAAGGAGCAGGATCTGGTCCAAATGTCGTTCAATTTCACTCTACAGCATTTGAACAGAGCCCTGTATTCCTCCTCTGAAATTTCCCTTCTCGAAATGGATCTCCGCACCCGCTCCGCCCTCGACGCCTGCCTCGAGCTCCTCGACGACTCCATCGCCGCCCTCTCCCGCTCCCTCCTCGCCCTCGCCGGCCCCTCCGACCACCACGACGTCCTCACCTGGCTCAGCGCCGCCCTCACCAATCAGGATACCTGTATCGACGAACTCGCTCTAATTAGGGGGAATGTGAAGGATCTTATGACGGATAAGCTGAGGGATTTGTCGGCGCTTTTGAGCAATTGCTTGGCGCTGTTTTCGGGTAATATAATGAGTGATTTCTCGGGTGTGCCGATTTCGAATAAGCGGCGGTTGATGAACGCCGGCGCGGAGGGGGGTGATTTTCCGGGATGGATGAGGCGGAGGGAACGGCGGTTGTTGGAACTTCCGGTGGCGGCGATGAAGCCGGATATTGTGGTTTCTAAGGATGGGAATGGGACGGTGAAGACGATTGCTGAAGCGATTAAGAAGGCTCCGGAAAATAGTACCAGAAGAACGATTATCTATGTCATGGCAGGAAGGTACGAAGAGGAGAATCTGAAGGTGGGGAGGAAGAAAATGAACCTGATGTTTGTGGGGGATGGGAAGGGTAAAACGGTCATCTCAGGTCGTATCAGTATCCTTGACAACGTCACAACTTTTCACACGGCATCGTTTGCTGCCACTGGTAACGGGTTAATTTTGAGGGATATAACATTTGAGAATTGGGCTGGTCCGGGTCGGCATCAAGCGGTGGCGCTTCGAGTAGGGGCCGACCATGCGGTCGTGTATCGCTGCAACATTATCGGCTATCAAGACACCCTGTACGTCCATTCCAACCGCCAATTCTTTAGAGAGTGCGACATTTACGGAACCGTGGACTTCATCTTCGGCAATGCGGCAGTGGTGTTTCAGAACTGCAGCATTTACGCCCGAAAGCCAATGGACTTTCAAAAAAACACAATCACGGCTCAAAATCGAAAGGACCCGAATCAAAACACGGGAATCTCCATCCACGCTTGTCGAATTCTAGCCACCTCCGATCTGTTGTCGTCCAATAGCACCCACCCAACGTATTTGGGCCGCCCGTGGAAATTATACTCTAGAGTCGTGTACATGCTATCGAACATCGGGAGCCACGTGCACCCTCGCGGTTGGCTGGAGTGGAATGCCACGTTCGCGCTGGACACGCTGTATTACGGCGAGTATATGAATTATGGGCCAGGTGGGTCTGTGGGCCAGAGGGTGACGTGGCCTGGGTACCGAGTCATCAACTCCACGGTGGAGGCTGGTAAGTTCACCGTGGCACAGTTCATTTATGGATCGTCGTGGCTTCCATCCACCGGAGTTGCATTTCTCGGAGGGTTAAATGTGTAA 1662 54.21 MAYHRLNSGDISGNKTPKRLLFVLLLLCLTVAVASSTRPDPGEAILKACRRTRFRKLCVKSFQNSPESATAKEQDLVQMSFNFTLQHLNRALYSSSEISLLEMDLRTRSALDACLELLDDSIAALSRSLLALAGPSDHHDVLTWLSAALTNQDTCIDELALIRGNVKDLMTDKLRDLSALLSNCLALFSGNIMSDFSGVPISNKRRLMNAGAEGGDFPGWMRRRERRLLELPVAAMKPDIVVSKDGNGTVKTIAEAIKKAPENSTRRTIIYVMAGRYEEENLKVGRKKMNLMFVGDGKGKTVISGRISILDNVTTFHTASFAATGNGLILRDITFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKPMDFQKNTITAQNRKDPNQNTGISIHACRILATSDLLSSNSTHPTYLGRPWKLYSRVVYMLSNIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGSVGQRVTWPGYRVINSTVEAGKFTVAQFIYGSSWLPSTGVAFLGGLNV 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 393264 397974 - Sed0016793.1 Sed13g0067 733577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0067 553 SMART PMEI_2 40 187 IPR006501 GO:0004857(InterPro)
Sed13g0067 553 NCBIfam pectinesterase inhibitor domain 21 188 IPR006501 GO:0004857(InterPro)
Sed13g0067 553 PANTHER PECTINESTERASE 23 542 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed13g0067 553 CDD PMEI-like_3 48 189 - -
Sed13g0067 553 Pfam Pectinesterase 239 536 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed13g0067 553 SUPERFAMILY Pectin lyase-like 234 549 IPR011050 -
Sed13g0067 553 Pfam Plant invertase/pectin methylesterase inhibitor 44 187 IPR006501 GO:0004857(InterPro)
Sed13g0067 553 FunFam Pectinesterase 233 551 - -
Sed13g0067 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Sed13g0067 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 189 IPR035513 -
Sed13g0067 553 Gene3D - 233 551 IPR012334 -
Sed13g0067 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 190 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0067 Sed-Chr13:393264 Sed14g1360 Sed-Chr14:22453067 4.60E-115 dispersed
Sed07g2158 Sed-Chr7:37136117 Sed13g0067 Sed-Chr13:393264 3.00E-96 transposed
Sed01g3493 Sed-Chr1:64019311 Sed13g0067 Sed-Chr13:393264 5.80E-185 wgd
Sed13g0067 Sed-Chr13:393264 Sed07g0850 Sed-Chr7:6228990 1.70E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0067 - - - 0.0