Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0074 ATGTCGTCTACGCTGCTAGAGGTGACCCGCTCGTCGCACGAGGAGGTGGAGCGGCTCGAGCGGCTTACAGTGAAGGAGCTTCAAAATGAGCCCGCGTCCGGCAAGGACCGTTTGGTACAGAGCCACCGAGTCCGCAACATGATCGACACCATCATGTCCACCACTGAAAAACTCGTTGAGATTTATGATGATAAGGATAATGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATCGACTGAAAGAGATTCGTGAATACCATAGGAGACATCCCGCTGCTCGTGTCGTTGATGTTGATGAGGATGAGGGTCTACTCAAAGAGGAACCACAAATCGAGTTCAGTGGAGAGGAAGCATATGGACGGTATCTTGACTTGCATGAATTGTACAATCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCTTACCTGGATGTTTTTTCACAACCCCAAAAAATCTCTCGCAAACTCAAGATTTCAAGACACTACAGGGAATACTTGGAGAACCTTCTTACTTATCTCATTTACTTTTTCCAGCGAACGGAGCCCTTGCAAGATCTTGATCGAATATTCTCCAAGGTTGAATCTGAATTTGAAGAGCGATGGGTTATTGGTACAATTGAAGGATGGGAGAACACTAGTCAAGATAATGGCCTTGATCCTGCCCAGCATAGTCTTGTTGATCTTGACTATTATAGCACAGTGGAAGAGCTAGTGGAACTAGGTCCTGAAAGGTTGAAGGAGGGTTTGGCAGCATTGGGATTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTTCTCACTAAGCACACACCTCTTCAATTGTTGGACAAAAAGCACTTTGCAAAACTGTCTCGACAACCGATTCAGAATGGGGCAGCTGGACCTTCACTAAACAATGACAATTTGAAACAAGTTGCGCTGATGGAAGCCAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACAATTGCCCGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCCGAGTCTGAAAGTGATGATGATGAGCAACAGATCTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCTATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAAATATGTGGGAACCATAGTTACTGGGGTCGTAGGGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTCAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAGAAATTCAAGAACGGCAAGGAGTTAACAAGTGGCGACCTGATCTGGAAGAAGAATACGAAGATAAAGAGGGTAACATTTACAATAAGAAGACATACACAGATTTGCAACGCCAGGGGTTGATATAA 1527 44.14 MSSTLLEVTRSSHEEVERLERLTVKELQNEPASGKDRLVQSHRVRNMIDTIMSTTEKLVEIYDDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVDEDEGLLKEEPQIEFSGEEAYGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKISRHYREYLENLLTYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGLDPAQHSLVDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQPIQNGAAGPSLNNDNLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKEIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 463569 471703 - Sed0008190.1 Sed13g0074 733584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0074 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 173 IPR031774 -
Sed13g0074 508 Pfam Replication stress response SDE2 C-terminal 223 303 IPR025086 -
Sed13g0074 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Sed13g0074 508 Coils Coil 352 379 - -
Sed13g0074 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Sed13g0074 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Sed13g0074 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 481 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
Sed13g0074 508 MobiDBLite consensus disorder prediction 362 381 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0074 K12827 - csv:101205916 936.791