Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0080 ATGAATTCAGCTCTCTACGGAGGGTTGGCACCTAGTTCTGATCAAACCAGAAGAACTGAGAAGCTATTCTATAATCTCATGCCTGAAGGCTTGAGCTCAGGGAAGAAAATTCTTGATCCACAAGGGCCTTTTCTTCAAAGTTGGAACAAGATATTTGTGTTGTCTTGTGTGATTGCTGTTTCCTTGGATCCTCTGTTCTTTTATGTTCCTGTCATTGACTATAGAAAGAAGTGTCTTAGGTTAGATGAGAAAGTGGAGATTGCAGCCTGTATATTGAGATTGTTTACAGATGTCTTCTATGTTCTGCATATCGTTTTTCAGTTTCGTACAGGATATATCGATCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTAGTCGAAGATTCCCGGGCGATAGCAATGCGGTATCTGTCATCATACTTTCTAATTGACATATCCTCAGTCCTCCCACTTCCACAGGTGGTGATTCTGATAAACATCCACAAAATGAGAGGTTTGAGATCGTTGTATACGAAGTACTTGCTGAAATCTGCTGTAATATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACTAGGACCTCGGGGATACTCATTGAAACTGCTTGGGCAGGAGCTGCATTTAATCTTTTTCTGTACATGCTAGCCAGTCATGTATTTGGGGCAATCTGGTACTTATGTTCCATCGAACGAGAAGCCCAGTGCTGGCAAGTTGCTTGTATAAAGCATCCTGACTGTTCCCCTACTTCCTTGTATTGTGGTTACAAATTTAGTAATGAATGGAACCTAACATTCCTCAATGATTCTTGTCCAATCAAAAAGCCAAATGTAGGAATTTTTAATTTTGGAATATTCCTTCAAGCCCTTCAATCTGACATTGTGGATTCAGATTTTCCAAAGAGGTTCATTCAGTGCTTTTGGTGGGGCTTACGGAATCTAAGCTCTTTGGGCCAAAATCTCACTACAAGTAAGTGCACATGGGAAAATTGCTTTGCCATTTTGGTTTGCATCTCTGGCTTAGTGTTGTTTGCATCTCTCCTCGGCAACGTGCAGATGTATTGGCGATCCGCAAACACAAGGGTGGAAGAGATGAGAGTCAGAAGGAGAGATGTTGAACAATGGATGTCACATCGCTTACTCACCGAAAATATGAGGGAGCGGGTTCGAAGGTCCGAACATTACACGTGGCAGGAAACCAGGGGCGTTGATGAACACGGTCTACTGCAAAATCTGCCCAGAGACTTCCAACGAGATATCAAGCGCCATCTTTGCTTGGCTTTGCTTATGCAAGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTAGATGCAATGTGTGCACGTCTCAAGCCCGTGTTGAACACAGAAGAAACCTGTATTGTTCGGGAAGGCGATCCAGTCGAAGAGATGCTGTTCATCATGCAAGGCAAGCTCTTAACCATGACTACAAATGGTGGTAGAACTGGTTTCTTCAACTCTGATTTTCTCATTGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGACCCTCGTTCCTCAACCAACCTCCCCATTTCGACTCGAACCGTTCGATCGCTAACAGAATTTGAAGCATTTGCGTTAAAACCCGACGACTTGAAATTCGTAGCCTCTCAATACCGCAGGCTTCACAGCAAGAAGCTGCGCCAGATTTTCAGGTTTTACTCACATCAATGGAGAACATGGGCAGCTTGTTTTGTACAAGCAGCATGGCGGCAACAACGAAGAAGGAAACTCAGGAAGTCTCTTAGGGAAGAATCGAGTAGGTTGAAAGATGCATTGGCTTGCCCGGAACGGCCATCGCCGAGTTTAGGCGCCACCATTTGTCCATCTAGATTTGTTGCCAACATGCCTATACTAAATAAAGCTAGGATGTCCATGCTGGTTCAGAAACCAGCAGAGCCTGATTTTACCTTGGAAGATAACAACACATAA 1980 43.38 MNSALYGGLAPSSDQTRRTEKLFYNLMPEGLSSGKKILDPQGPFLQSWNKIFVLSCVIAVSLDPLFFYVPVIDYRKKCLRLDEKVEIAACILRLFTDVFYVLHIVFQFRTGYIDPSSRVFGRGVLVEDSRAIAMRYLSSYFLIDISSVLPLPQVVILINIHKMRGLRSLYTKYLLKSAVICQFVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLASHVFGAIWYLCSIEREAQCWQVACIKHPDCSPTSLYCGYKFSNEWNLTFLNDSCPIKKPNVGIFNFGIFLQALQSDIVDSDFPKRFIQCFWWGLRNLSSLGQNLTTSKCTWENCFAILVCISGLVLFASLLGNVQMYWRSANTRVEEMRVRRRDVEQWMSHRLLTENMRERVRRSEHYTWQETRGVDEHGLLQNLPRDFQRDIKRHLCLALLMQVPMFEKMDEQLLDAMCARLKPVLNTEETCIVREGDPVEEMLFIMQGKLLTMTTNGGRTGFFNSDFLIAGDFCGEELLTWALDPRSSTNLPISTRTVRSLTEFEAFALKPDDLKFVASQYRRLHSKKLRQIFRFYSHQWRTWAACFVQAAWRQQRRRKLRKSLREESSRLKDALACPERPSPSLGATICPSRFVANMPILNKARMSMLVQKPAEPDFTLEDNNT 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 510575 516218 - Sed0018615.2 Sed13g0080 733590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0080 659 Pfam Ion transport protein 48 359 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g0080 659 ProSiteProfiles cAMP/cGMP binding motif profile. 439 523 IPR000595 -
Sed13g0080 659 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 623 - -
Sed13g0080 659 SUPERFAMILY Voltage-gated potassium channels 39 361 - -
Sed13g0080 659 Gene3D - 51 360 - -
Sed13g0080 659 SUPERFAMILY cAMP-binding domain-like 368 564 IPR018490 -
Sed13g0080 659 FunFam Cyclic nucleotide-gated ion channel 1 366 430 - -
Sed13g0080 659 Gene3D Jelly Rolls 437 557 IPR014710 -
Sed13g0080 659 Gene3D Helix hairpin bin 364 430 - -
Sed13g0080 659 SMART cnmp_10 439 570 IPR000595 -
Sed13g0080 659 CDD CAP_ED 439 558 IPR000595 -
Sed13g0080 659 FunFam Cyclic nucleotide-gated ion channel 1 437 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0422 Sed-Chr5:2835168 Sed13g0080 Sed-Chr13:510575 2.80E-250 dispersed
Sed13g0080 Sed-Chr13:510575 Sed13g2104 Sed-Chr13:25724430 5.00E-169 dispersed
Sed13g0079 Sed-Chr13:510575 Sed13g0080 Sed-Chr13:510575 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0080 K05391 - csv:101214911 979.933