Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0081 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCCCAGGCTGGACTTGTAGGAATAATCAATAGAAGGGTTCAAATCAACAATATCTGGAGGAGTTTGCCTTCGAATCTTGGATTTGTTCACACCTGGAAGCGCGATTATAGAAAGAGTCTCTTGATGATGGTTGATACAGGTGCATCGGAAAATCGCGGGCTGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATGCCACTGGAGGGTGGAAAAGTAACGATGGGAAACTTAGCTGGGGGTATTCAAGTTTCAGAGGAAAGAGGGCAAACATGGAAGATTTCTTTGATATCAAAACATCAAAAGTTGATGGTCAAACGGTCTGCCTTTTTGGCATATTTGATGGTCACGGTGGATCTCGTGCCGCAGAGTTCTTAAAAAACCATCTCTTTGAGAATCTGTTGAAGCACCCAAAATTTTTGAAGGATACTAAATTTGCTATCAGTGAAACGTATCAACAGACTGATGCTGAATTTTTAAATTCGGAAAAAGATACTTTAAGGGACGATGGTTCTACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTGCTATAATATCAAAGGGTGGTGAAGCAATCCCTCTTTCTGAGGACCATAAACCGAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGTGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTTTTAGCAATGTCCCGCGCTTTTGGTAATAAGATGTTGAAGCAGTTCGTCGTGGCAGAGCCCGAGATTCAGGATCTTGAAGTAGACAAGAACATCGAGATGCTCATTCTTGCAACCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTGGCAGGAAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCATTTACGCGTGGTAGCGCTGACAATATAACCTGCATTGTGGTGAAGTTTCATCACGACAATGCGGGTCCTGCTGCCGGAACTCGGGAAAGCAAATAA 1062 44.44 MVCSYNIRNVIAQAGLVGIINRRVQINNIWRSLPSNLGFVHTWKRDYRKSLLMMVDTGASENRGLVVDKHPEKDEDGGYATGGWKSNDGKLSWGYSSFRGKRANMEDFFDIKTSKVDGQTVCLFGIFDGHGGSRAAEFLKNHLFENLLKHPKFLKDTKFAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVAEPEIQDLEVDKNIEMLILATDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAAGTRESK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 517530 522281 + Sed0001892.1 Sed13g0081 733591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0081 353 Gene3D - 84 343 IPR036457 -
Sed13g0081 353 PANTHER PROTEIN PHOSPHATASE 76 337 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g0081 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Sed13g0081 353 SMART PP2C_4 82 336 IPR001932 -
Sed13g0081 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Sed13g0081 353 SUPERFAMILY PP2C-like 89 339 IPR036457 -
Sed13g0081 353 CDD PP2Cc 94 338 IPR001932 -
Sed13g0081 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
Sed13g0081 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Sed13g0081 353 SMART PP2C_SIG_2 74 338 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0822 Sed-Chr7:6050722 Sed13g0081 Sed-Chr13:517530 1.20E-177 dispersed
Sed13g0081 Sed-Chr13:517530 Sed13g0083 Sed-Chr13:517530 6.00E-153 dispersed
Sed13g0081 Sed-Chr13:517530 Sed13g0082 Sed-Chr13:517530 4.00E-141 tandem
Sed13g0081 Sed-Chr13:517530 Sed07g0821 Sed-Chr7:6050722 1.10E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0081 K17506 - csv:101203681 658.292