Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0081 | ATGGTATGCAGCTACAATATAAGGAATGTGATTGCCCAGGCTGGACTTGTAGGAATAATCAATAGAAGGGTTCAAATCAACAATATCTGGAGGAGTTTGCCTTCGAATCTTGGATTTGTTCACACCTGGAAGCGCGATTATAGAAAGAGTCTCTTGATGATGGTTGATACAGGTGCATCGGAAAATCGCGGGCTGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATGCCACTGGAGGGTGGAAAAGTAACGATGGGAAACTTAGCTGGGGGTATTCAAGTTTCAGAGGAAAGAGGGCAAACATGGAAGATTTCTTTGATATCAAAACATCAAAAGTTGATGGTCAAACGGTCTGCCTTTTTGGCATATTTGATGGTCACGGTGGATCTCGTGCCGCAGAGTTCTTAAAAAACCATCTCTTTGAGAATCTGTTGAAGCACCCAAAATTTTTGAAGGATACTAAATTTGCTATCAGTGAAACGTATCAACAGACTGATGCTGAATTTTTAAATTCGGAAAAAGATACTTTAAGGGACGATGGTTCTACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTGCTATAATATCAAAGGGTGGTGAAGCAATCCCTCTTTCTGAGGACCATAAACCGAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGTGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTTTTAGCAATGTCCCGCGCTTTTGGTAATAAGATGTTGAAGCAGTTCGTCGTGGCAGAGCCCGAGATTCAGGATCTTGAAGTAGACAAGAACATCGAGATGCTCATTCTTGCAACCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTGGCAGGAAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCATTTACGCGTGGTAGCGCTGACAATATAACCTGCATTGTGGTGAAGTTTCATCACGACAATGCGGGTCCTGCTGCCGGAACTCGGGAAAGCAAATAA | 1062 | 44.44 | MVCSYNIRNVIAQAGLVGIINRRVQINNIWRSLPSNLGFVHTWKRDYRKSLLMMVDTGASENRGLVVDKHPEKDEDGGYATGGWKSNDGKLSWGYSSFRGKRANMEDFFDIKTSKVDGQTVCLFGIFDGHGGSRAAEFLKNHLFENLLKHPKFLKDTKFAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVAEPEIQDLEVDKNIEMLILATDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAAGTRESK | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 517530 | 522281 | + | Sed0001892.1 | Sed13g0081 | 733591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0081 | 353 | Gene3D | - | 84 | 343 | IPR036457 | - | |
Sed13g0081 | 353 | PANTHER | PROTEIN PHOSPHATASE | 76 | 337 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed13g0081 | 353 | ProSitePatterns | PPM-type phosphatase domain signature. | 123 | 131 | IPR000222 | GO:0043169(InterPro) | |
Sed13g0081 | 353 | SMART | PP2C_4 | 82 | 336 | IPR001932 | - | |
Sed13g0081 | 353 | Pfam | Protein phosphatase 2C | 96 | 331 | IPR001932 | - | |
Sed13g0081 | 353 | SUPERFAMILY | PP2C-like | 89 | 339 | IPR036457 | - | |
Sed13g0081 | 353 | CDD | PP2Cc | 94 | 338 | IPR001932 | - | |
Sed13g0081 | 353 | FunFam | Probable protein phosphatase 2C 76 | 84 | 344 | - | - | |
Sed13g0081 | 353 | ProSiteProfiles | PPM-type phosphatase domain profile. | 92 | 338 | IPR001932 | - | |
Sed13g0081 | 353 | SMART | PP2C_SIG_2 | 74 | 338 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0822 | Sed-Chr7:6050722 | Sed13g0081 | Sed-Chr13:517530 | 1.20E-177 | dispersed | |
Sed13g0081 | Sed-Chr13:517530 | Sed13g0083 | Sed-Chr13:517530 | 6.00E-153 | dispersed | |
Sed13g0081 | Sed-Chr13:517530 | Sed13g0082 | Sed-Chr13:517530 | 4.00E-141 | tandem | |
Sed13g0081 | Sed-Chr13:517530 | Sed07g0821 | Sed-Chr7:6050722 | 1.10E-178 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0081 | K17506 | - | csv:101203681 | 658.292 |