Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0082 ATGGAAGATTTCTTTGATATCAAAACATCAAAAGTTGATGGTCAAACGGTCTGCCTTTTTGGCATATTTGATGGTCACGGTGGATCTCGTGCCGCAGAGTTCTTAAAAAACCATCTCTTTGAGAATCTGTTGAAGCACCCAAAATTTTTGAAGGATACTAAATTTGCTATCAGTGAAACGTATCAACAGACTGATGCTGAATTTTTAAATTCGGAAAAAGATACTTTAAGGGACGATGGTTCTACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTGCTATAATATCAAAGGGTGGTGAAGCAATCCCTCTTTCTGAGGACCATAAACCGAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGTGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTTTTAGCAATGTCCCGCGCTTTTGGTAATAAGATGTTGAAGCAGTTCGTCGTGGCAGAGCCCGAGATTCAGGATCTTGAAGTAGACAAGAACATCGAGATGCTCATTCTTGCAACCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTGGCAGGAAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCATTTACGCGTGGTAGCGCTGACAATATAACCTGCATTGTGGTGAAGTTTCATCACGACAATGCGGGTCCTGCTGCCGGAACTCGGGAAAGCAAATAA 750 44.53 MEDFFDIKTSKVDGQTVCLFGIFDGHGGSRAAEFLKNHLFENLLKHPKFLKDTKFAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVAEPEIQDLEVDKNIEMLILATDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAAGTRESK 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 517530 522281 + Sed0001892.2 Sed13g0082 733592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0082 249 Gene3D - 1 239 IPR036457 -
Sed13g0082 249 ProSiteProfiles PPM-type phosphatase domain profile. 1 234 IPR001932 -
Sed13g0082 249 PANTHER PROTEIN PHOSPHATASE 1 233 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g0082 249 FunFam Probable protein phosphatase 2C 76 1 240 - -
Sed13g0082 249 SUPERFAMILY PP2C-like 1 235 IPR036457 -
Sed13g0082 249 SMART PP2C_SIG_2 2 234 IPR001932 -
Sed13g0082 249 ProSitePatterns PPM-type phosphatase domain signature. 19 27 IPR000222 GO:0043169(InterPro)
Sed13g0082 249 SMART PP2C_4 6 232 IPR001932 -
Sed13g0082 249 CDD PP2Cc 1 234 IPR001932 -
Sed13g0082 249 Pfam Protein phosphatase 2C 16 227 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0082 Sed-Chr13:517530 Sed13g1941 Sed-Chr13:24319361 3.60E-88 dispersed
Sed13g0081 Sed-Chr13:517530 Sed13g0082 Sed-Chr13:517530 4.00E-141 tandem
Sed13g0082 Sed-Chr13:517530 Sed13g0083 Sed-Chr13:517530 3.70E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0082 K17506 - csv:101203681 464.151