Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0083 ATGTGCTTAAACTTTTATGTTATTGGTTTGATCTGCAGTAACGATGGGAAACTTAGCTGGGGGTATTCAAGTTTCAGAGGAAAGAGGGCAAACATGGAAGATTTCTTTGATATCAAAACATCAAAAGTTGATGGTCAAACGGTCTGCCTTTTTGGCATATTTGATGGTCACGGTGGATCTCGTGCCGCAGAGTTCTTAAAAAACCATCTCTTTGAGAATCTGTTGAAGCACCCAAAATTTTTGAAGGATACTAAATTTGCTATCAGTGAAACGTATCAACAGACTGATGCTGAATTTTTAAATTCGGAAAAAGATACTTTAAGGGACGATGGTTCTACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTGCTATAATATCAAAGGGTGGTGAAGCAATCCCTCTTTCTGAGGACCATAAACCGAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGTGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTTTTAGCAATGTCCCGCGCTTTTGGTAATAAGATGTTGAAGCAGTTCGTCGTGGCAGAGCCCGAGATTCAGGATCTTGAAGTAGACAAGAACATCGAGATGCTCATTCTTGCAACCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTGGCAGGAAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCATTTACGCGTGGTAGCGCTGACAATATAACCTGCATTGTGGTGAAGTTTCATCACGACAATGCGGGTCCTGCTGCCGGAACTCGGGAAAGCAAATAA 843 44.01 MCLNFYVIGLICSNDGKLSWGYSSFRGKRANMEDFFDIKTSKVDGQTVCLFGIFDGHGGSRAAEFLKNHLFENLLKHPKFLKDTKFAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVAEPEIQDLEVDKNIEMLILATDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAAGTRESK 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 517530 522281 + Sed0001892.3 Sed13g0083 733593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0083 280 SMART PP2C_4 9 263 IPR001932 -
Sed13g0083 280 PANTHER PROTEIN PHOSPHATASE 20 264 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g0083 280 ProSitePatterns PPM-type phosphatase domain signature. 50 58 IPR000222 GO:0043169(InterPro)
Sed13g0083 280 Gene3D - 9 270 IPR036457 -
Sed13g0083 280 Pfam Protein phosphatase 2C 23 258 IPR001932 -
Sed13g0083 280 SUPERFAMILY PP2C-like 12 266 IPR036457 -
Sed13g0083 280 FunFam Probable protein phosphatase 2C 76 11 271 - -
Sed13g0083 280 SMART PP2C_SIG_2 17 265 IPR001932 -
Sed13g0083 280 ProSiteProfiles PPM-type phosphatase domain profile. 19 265 IPR001932 -
Sed13g0083 280 CDD PP2Cc 21 265 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0821 Sed-Chr7:6050722 Sed13g0083 Sed-Chr13:517530 6.00E-137 dispersed
Sed13g0081 Sed-Chr13:517530 Sed13g0083 Sed-Chr13:517530 6.00E-153 dispersed
Sed13g0083 Sed-Chr13:517530 Sed13g1941 Sed-Chr13:24319361 1.30E-94 dispersed
Sed13g0082 Sed-Chr13:517530 Sed13g0083 Sed-Chr13:517530 3.70E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0083 K17506 - csv:101203681 498.819