Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0089 ATGGCTCTCGCCGTGCTCGACGCCCTCGACAATGCTCGAACCCAATGGTACCACATAACCGCCATAGTCATTGCCGGGATGGGGTTTTTCACAGACGCCTACGATCTCTTCTGCATCTCGGCCGTGTCCAAGCTCCTCGGTCGACTATATTACTTCGATCCAGAGAGTTCGAAGCCGGGAAAGCTTCCGAACGCAATCAACAACTCGGTGATTGGCGTGGCGCTCGTGGGAACCCTAACCGGGCAGCTATTTTTCGGGTGGTTGGGGGACAAGCTTGGGAGGAAGAAAGTTTATGGTGTAACCCTAGTTCTCATGGCGTTTTGTGCCATTTGCTCAGGGCTTTCTTTTGGGGCAACGTCAAAATCAGTGATTGGTACACTTTGTTTCTTTAGATTTTGGCTTGGATTTGGAATTGGCGGTGATTATCCACTTTCAGCGACAATTATGTCTGAATATGCTAATAAAAAAACTCGAGGGGCATTTATTGCAGCTGTTTTTGCCATGCAGGGTGTGGGGCTAATATTTGCAGGGTTAGTAACAATGATTCTAGCAAAAATCTTCCTCTCCATTCACGATGCTCCATCCTACAAAGGAGACAAAGTATTTTCCACACAACCTCAAGGAGATTTCCTATGGCGAATTGTGCTCATGCTTGGTGCTTTACCAGCCATTTTAACCTACTATTGGCGTATGAAAATGCCCGAAACCGGTCGATACACCGCCCTAATCGAAGGTAACGCGAAGCAAGCCGCCGCAGACATGGGCAAGGTCTTGGAAATTCAAATCCAAGCTGAACAAGACAAGCTTAAGGATTTCAAAACAGCCAATGAATATGGCTTGCTCTCTAAAGAGTTCTTCAATCGCCATGGTTTACATTTAATTGGCACTACAACTACTTGGTTCTTGTTGGACATTGCCTTTTATAGCAATAACCTTACTCAAAAGGACATTTTCCCAGCCATGAACTTGACCAAACAGGCTGAAGATGTTAATGCTTTGGAAGAAGTTTACGAAACTTCCAAGGCGATGTTTCTTGTCGCCTTGCTTGGTACTTTTCCCGGTTACTGGTTCACCGTCTTTCTCATTGAGAAGCTCGGAAGGTTTAAAATCCAATTGATGGGATTCTTCATGATGTCTATCTTCATGGCGGTCCTTGGCATTCGGTACAACTATATGAAGCATCACCCTGCGGAATTTGCGATTCTATATGGTTTGACGTTCTTTTTTGCGAATTTCGGGCCGAATAGCACCACATTTGTCCTTCCGGCCGAGCTCTTCCCAACTAGGGTTCGGTCAACATGCCATGCGTTGAGTGCTGCGTCAGGGAAGGCTGGTGCGATCGTTGGAGCTTTCGGGGTGCAAAACTATACGTTGGATGGTAACCCTAGCAAGATTCAAAAGGCGATGATTTTCTTGGCCTTTACTAACATGTTAGGGTTTGTGTTTACCTTCCTGGTGACGGAGACGAAAGGGCGGTCGTTAGAGGAGATCTCGGGTGAGGATAGAGGCGGTGGCGAAAATGGAACTCAAATGCCTGTGAGATCAATGGGAATGCCAGGAGGTCAAATGGAAGGTGAAATTTAA 1584 46.46 MALAVLDALDNARTQWYHITAIVIAGMGFFTDAYDLFCISAVSKLLGRLYYFDPESSKPGKLPNAINNSVIGVALVGTLTGQLFFGWLGDKLGRKKVYGVTLVLMAFCAICSGLSFGATSKSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGLIFAGLVTMILAKIFLSIHDAPSYKGDKVFSTQPQGDFLWRIVLMLGALPAILTYYWRMKMPETGRYTALIEGNAKQAAADMGKVLEIQIQAEQDKLKDFKTANEYGLLSKEFFNRHGLHLIGTTTTWFLLDIAFYSNNLTQKDIFPAMNLTKQAEDVNALEEVYETSKAMFLVALLGTFPGYWFTVFLIEKLGRFKIQLMGFFMMSIFMAVLGIRYNYMKHHPAEFAILYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAASGKAGAIVGAFGVQNYTLDGNPSKIQKAMIFLAFTNMLGFVFTFLVTETKGRSLEEISGEDRGGGENGTQMPVRSMGMPGGQMEGEI 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 566724 569042 + Sed0018773.1 Sed13g0089 733599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0089 527 FunFam Inorganic phosphate transporter 1-6 17 510 - -
Sed13g0089 527 Pfam Sugar (and other) transporter 23 498 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed13g0089 527 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 491 IPR020846 GO:0022857(InterPro)
Sed13g0089 527 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 496 - -
Sed13g0089 527 CDD MFS_PhT 22 490 - -
Sed13g0089 527 SUPERFAMILY MFS general substrate transporter 9 498 IPR036259 -
Sed13g0089 527 NCBIfam phosphate:H+ symporter 6 500 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Sed13g0089 527 Gene3D MFS general substrate transporter like domains 17 513 IPR036259 -
Sed13g0089 527 MobiDBLite consensus disorder prediction 495 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1407 Sed-Chr2:50261134 Sed13g0089 Sed-Chr13:566724 7.60E-184 dispersed
Sed04g1985 Sed-Chr4:34407701 Sed13g0089 Sed-Chr13:566724 2.70E-181 dispersed
Sed05g0108 Sed-Chr5:655102 Sed13g0089 Sed-Chr13:566724 3.40E-179 dispersed
Sed12g1032 Sed-Chr12:6680763 Sed13g0089 Sed-Chr13:566724 6.90E-182 dispersed
Sed13g0089 Sed-Chr13:566724 Sed07g0963 Sed-Chr7:7038812 1.20E-279 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0089 K08176 - csv:101210631 947.962