Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0100 ATGGAGAATATGCAGTATGCTGAGGAGCTTGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACAAGTACTCTTCAAGGTTATGAGAATGAGCTGAGCACAGATATTGGAAAAGGGTTCCAAGTGGACAAGATTTTAGATTTAATCTTTTCAATATATATACCCAAGTTTCAGGCAGAAAAGTTGGTGGGGCTACTGAGTTTTTTCAAGCAGTGCCTTGCTTCTTCATCGGATAATACACTTCTTTCTACCGTATCGAAATTGGAGGTTTCAATCCTTCGGTATTATATGGTATATGGCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAAGTAAATGGCAATGATCTACTGCAGAGGGCTAAAGACTGGGCTCCATGGTTTGCCATGCCATACCTAAAGAATCCGAAGTTTGATCCCAACTTTTGCGTTTATTTTACAAAGGAGTGGTATGAAGCACTACATGTTTCTGTTAGGAATTTTTTCAGTGAAGTCTTCAATGGTACTCGCCTCCCTGCCCTACTAAAGCTCAGTTCAGAGAAGAATGCAGTTAATCATCTGAAAAGAGATATCAAGCAGCTCAACTTAAAATTAGCACAACTTCAGGCTTTATTAGAGGAAAAAGAGGCTCATCTGTGCCACTTGAGAAGCCTAGTGAACAGTTCCTCTAGTCTGGTGAACGAAGAGAATGTTCCTTCATCAAATGATGCTCAGGAGATTTGTCCCTCTCCAACTACACAAGTTGGGGAAACTCAAATGGCTCGAGAAGGGGTCTTAGTTGGCTCTGATAGGCATAATGCTTCAAATGAAGATTCAAGTTCTTTATTAACTCTTTGTACGGGAGATGGTGAAGTTGGTGATCCAAGTCATAGATGTGAAGATGGTCGTGAAATGGTGAATAGTGGAGAAGTCCACGTACAAGAAGAATTTCCTGAAGTGAAAGTAGAATTTCAGGAGGCATTTTTGGGCCACACGAGTCCAATCAGTCGTTGCCGTTTTTCTGCCTCTGGAAACAATGTAGCGAGTGCTTCTTTGGATGGCACAGTCAGGATATGGACATATGACTCGTCCACTCCAGCTTCTAGAAATGCAACAATTTACTGTGGAGCAGAGATTATGTCACTTGATTGGGAGTGTAAATCTGATCGCCTACTTCTAATAGGCACTGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAGCACAACTGATATGTTCCCTAGCGTGTTGGATATCAAGTGCAGTCCAGTTGAATCCATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTTCTACTTCTAGTTATGTGGATAGTTTGGGGTTTGCTTCACTAACAGTATGGAACATGAGAACATGGAAGTCAATGACAGTGCTTCCTCTTGGTAAGGATCCACCAGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATTTTAGCAGCAGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCTGCTTGTCTACAAATTACAGGGTGGCCTGCTCATGATTCTGCTATAAACTCGATCCTTTTTGGGCCAGATGAAACTAGCATTTTTACCTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCACAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGTGATCCCGAGAGCTCTCTATCTTTGAGACATGAAATGGCTTTGGATGCAAATGGAAAGAGGCTTTTGGCAACATCAAGTTCAGTGAGAGCTCCCATGTACCAGGTTCATTACTTCCTCCATTGGTTTTGTCGCATCCAATAG 1827 42.04 MENMQYAEELVREFLVFRGFTSTLQGYENELSTDIGKGFQVDKILDLIFSIYIPKFQAEKLVGLLSFFKQCLASSSDNTLLSTVSKLEVSILRYYMVYGIQSGRTDKVLEFLKVNGNDLLQRAKDWAPWFAMPYLKNPKFDPNFCVYFTKEWYEALHVSVRNFFSEVFNGTRLPALLKLSSEKNAVNHLKRDIKQLNLKLAQLQALLEEKEAHLCHLRSLVNSSSSLVNEENVPSSNDAQEICPSPTTQVGETQMAREGVLVGSDRHNASNEDSSSLLTLCTGDGEVGDPSHRCEDGREMVNSGEVHVQEEFPEVKVEFQEAFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLSTTDMFPSVLDIKCSPVESIFVSAAASRGHGSTSSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDPESSLSLRHEMALDANGKRLLATSSSVRAPMYQVHYFLHWFCRIQ 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 661251 669661 - Sed0015140.3 Sed13g0100 733610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0100 608 Coils Coil 179 213 - -
Sed13g0100 608 Gene3D - 441 598 IPR015943 GO:0005515(InterPro)
Sed13g0100 608 Gene3D - 181 440 IPR015943 GO:0005515(InterPro)
Sed13g0100 608 ProSiteProfiles Trp-Asp (WD) repeats profile. 513 546 IPR001680 GO:0005515(InterPro)
Sed13g0100 608 PANTHER OS05G0299300 PROTEIN 1 598 - -
Sed13g0100 608 SUPERFAMILY WD40 repeat-like 319 560 IPR036322 GO:0005515(InterPro)
Sed13g0100 608 Pfam Anaphase-promoting complex subunit 4 WD40 domain 470 524 IPR024977 -
Sed13g0100 608 SMART WD40_4 361 400 IPR001680 GO:0005515(InterPro)
Sed13g0100 608 SMART WD40_4 462 503 IPR001680 GO:0005515(InterPro)
Sed13g0100 608 SMART WD40_4 316 355 IPR001680 GO:0005515(InterPro)
Sed13g0100 608 SMART WD40_4 504 545 IPR001680 GO:0005515(InterPro)
Sed13g0100 608 MobiDBLite consensus disorder prediction 228 250 - -
Sed13g0100 608 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 358 - -
Sed13g0100 608 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515(InterPro)
Sed13g0100 608 Pfam WD domain, G-beta repeat 323 354 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0100 K24760 - - csv:101209643 1073.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0098 Sed-Chr13:661251 Sed13g0100 Sed-Chr13:661251 0.00E+00 dispersed
Sed13g0099 Sed-Chr13:661251 Sed13g0100 Sed-Chr13:661251 5.80E-274 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32