Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0115 ATGGCGGCCGGCATTTCCGCCGCCTTATCACCCAAACCACTCCACCTCTTCCTCACTTCCTCCAAACCTCGAACTCCGATTCTATTTCCACTTTCAGTCTTCCAAAACAGTAGAATCCAACGGAAAACGCGGAGAAAAACGATTCTCACCGTCTGCGTGCTCGTCGAGGACAAGAAAAGTTCCGGCGAAGTGGAGAATCCGGCCGATGAAGAGGCGGCTCCGATTGTTGTAGTTCCTCAGATCTCATCGCCTCGTGTTGCAGAGAAACTGGCGAGGAAGAAATCGGAGCGGTTCACTTATCTTGTTGCTGCGGTTCTGTCTAGCTTTGGAATCACTTCCATGGCTGTCATGGCGGTTTATTACCGATTCTACTGGCAAATGGAGGGCGGAGAGATTCCTTTCTCTGAAATGTTTGGTACATTTGCTCTTTCCGTTGGCGCTGCTGTAGGGATGGAGTTTTGGGCGAGATGGGCGCATAAAGCTCTCTGGCACGCTTCCTTGTGGCATATGCACGAGTCTCATCATAAACCAAGAGAAGGACCGTTCGAGCTGAACGATGTTTTCGCCATTACCAACGCCGTGCCCGCCATAGCTCTTCTCTCTTACGGCTTCTTCCATAAAGGCCTCGTTCCTGGTCTCTGCTTCGGCGCTGGCCTTGGAATTACGGTTTTTGGGATGGCTTACATGTTCGTCCATGATGGTCTCGTTCACAAAAGGTTCCCTGTGGGCCCCATTGCCGACGTGCCTTATTTTCGAAAGGTCGCTGTTGCTCACCAGCTTCACCATTCGGAGAAGTTTAACGGCGTGCCCTACGGGCTGTTTTTGGGACCAAAGGAATTAGAGGAAGTGGGAGGCCTAGAAGAATTGGAGAAAGAAATCAACAGAAGAACAAAATCAACGGCCACAAAATCAATCAACGGTTCTTGA 927 50.49 MAAGISAALSPKPLHLFLTSSKPRTPILFPLSVFQNSRIQRKTRRKTILTVCVLVEDKKSSGEVENPADEEAAPIVVVPQISSPRVAEKLARKKSERFTYLVAAVLSSFGITSMAVMAVYYRFYWQMEGGEIPFSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHKPREGPFELNDVFAITNAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRKVAVAHQLHHSEKFNGVPYGLFLGPKELEEVGGLEELEKEINRRTKSTATKSINGS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 768483 772393 + Sed0026940.1 Sed13g0115 733625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0115 308 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 27 300 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3857 Sed-Chr1:67823155 Sed13g0115 Sed-Chr13:768483 7.90E-95 dispersed
Sed07g0990 Sed-Chr7:7250467 Sed13g0115 Sed-Chr13:768483 7.70E-117 dispersed
Sed07g0991 Sed-Chr7:7250467 Sed13g0115 Sed-Chr13:768483 6.30E-93 dispersed
Sed13g0115 Sed-Chr13:768483 Sed07g0988 Sed-Chr7:7250467 4.20E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0115 K15746 - csv:101212140 530.02