Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0125 ATGTCATTTTCCAATATGCTTGATATCTTGAAGGGGCATATTAGAGACACTCACCTAGTGGTGCAATTATCCCACGTTGAAAAAACGGTGGCGGAATCCCATTTCTACCCCCACAACACTTCCAAAACACCCAAAAAGCCAGAGGAGAAACGACAAGTCGAATTCCCACTAGATTGCACGACCTTCAATAACGTCACAGGAGGAGCCTGCCCTGCCAACTACCCGACTAATCGGATAGCGGAGCAAGATCCGAACCGTCCAGAGCCGCCCACGTGTCCAGACTACTTCCGTTGGATCCACGAGGACCTGCGGCGGTGGGCCCGGACTGGGATAACGAGGGCGGCGGTGGAGGAGGGGCGGCGGACGGCGAACTTCCGGCTGGCGGTGGTGAACGGAAGAGCTTACGTGGAGAGCTACACGAAATCGTTTCAGTCGAGAGATAGTTTTACGGTGTGGGGGATCCTACAGTTGCTACGGAGGTACCCAGGGAGAGTGCCTGATTTGGAGCTCATGTTTGACTGCGTTGACTGGCCTGTGGTTTTGGCTAAAAGGTTTAGTGGGCCTGATGGGCCGACCCCACCTCCTTTGTTTCGCTATTGTGGAGATGATGCCACGTTGGATATTGTTTTTCCCGATTGGTCCTTTTGGGGATGGCCAGAGATCAACATAAAGCCATGGGAGCCATTGTTGAAGGATCTAAAAGAAGGGAACAAAAGGATCCCATGGAAGAGTAGAGAGCCTTACGCTTATTGGAAGGGAAATCCCGAGGTTGCCGAAACTCGAAAAGATCTACTTAAATGCAATGTCTCTGACCAACAAGATTGGAATGCTCGTGTATTTGCTCAGAATTGGATGGAAGAATCCCAGCAAGGATACAAGCAATCAGATCTAGCAAACCAATGTCTTCATAAGTATAAGATCTATATAGAAGGATCAGCTTGGTCTGTTAGTGAAAAGTACATCCTCGCTTGCGATTCCGTTACATTACTCGTAAAGCCTCATTACTACGACTTCTTCACGAGAGGTTTGATGCCAGTGCATCACTATTGGCCCGTAAAGAACGACGACAAGTGCAAGTCTATAAAATTTGCAGTTGATTGGGGTAATAGCCATAGGCAAAAGGCACAGGCCATTGGCAAGGCAGCAAGCAGTTTCATCCAAGAGGAGCTGAAGATGGACTATGTGTATGACTACATGTTTCATCTTCTAACTGAATACTCTAAACTCCTAAGATTCAAACCAACAATACCACCCAATGCGATCGAGCTTTGTTCCGAGGCCATGGCCTGTCCAGCTGAAGGGCTCACTCGAAAATTCATGACAGAGTCATTGGTGAAGAGCCCTGCAGATTCGAGCCCGTGCACGATGCCGCCTCCGTATGATCCCGCATCACTTTTTGTTGTTCGTAGTAAAAAAGAGAATGCAATTAAACAAGTAGAAAAATGGGAGACAAATTTTTGGGATACCCAAAGTAAGCAGTCATAG 1485 47.95 MSFSNMLDILKGHIRDTHLVVQLSHVEKTVAESHFYPHNTSKTPKKPEEKRQVEFPLDCTTFNNVTGGACPANYPTNRIAEQDPNRPEPPTCPDYFRWIHEDLRRWARTGITRAAVEEGRRTANFRLAVVNGRAYVESYTKSFQSRDSFTVWGILQLLRRYPGRVPDLELMFDCVDWPVVLAKRFSGPDGPTPPPLFRYCGDDATLDIVFPDWSFWGWPEINIKPWEPLLKDLKEGNKRIPWKSREPYAYWKGNPEVAETRKDLLKCNVSDQQDWNARVFAQNWMEESQQGYKQSDLANQCLHKYKIYIEGSAWSVSEKYILACDSVTLLVKPHYYDFFTRGLMPVHHYWPVKNDDKCKSIKFAVDWGNSHRQKAQAIGKAASSFIQEELKMDYVYDYMFHLLTEYSKLLRFKPTIPPNAIELCSEAMACPAEGLTRKFMTESLVKSPADSSPCTMPPPYDPASLFVVRSKKENAIKQVEKWETNFWDTQSKQS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 815906 820016 + Sed0019719.2 Sed13g0125 733635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0125 494 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 49 480 IPR051091 -
Sed13g0125 494 SMART cap10 164 413 IPR006598 -
Sed13g0125 494 Pfam Glycosyl transferase family 90 90 483 IPR006598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0125 Sed-Chr13:815906 Sed13g1468 Sed-Chr13:19874107 1.20E-111 dispersed
Sed13g0124 Sed-Chr13:814282 Sed13g0125 Sed-Chr13:815906 5.20E-291 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g671 . . . . Bpe03g00287 . Bma10g01223 . Cmo16g00132 Cmo18g01270 . . . . Sed13g0125 . . Bhi01g01320 Tan01g0251 Cmetu09g0720 . Hepe07g0158 Mch10g0154 . . . . . . . . . . . Cone15ag0089 Lsi05g01226 . . . Blo07g00411 Blo09g00111 . . . . . . . . . Cma16g00126 Cma18g01247 . . . . Bhi12g00232 . . Lac11g2111 Hepe06g1560 . Lcy12g1668 . . . . . . . . . Chy06g00947 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155