Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0133 ATGCCTTCATGGTGGGGGAAGCCATCATCCAAAGAAGCAAAGAAGAAAACGGGAAAGGAAAGTTTCATTGATTCGTTACATCGTAAGTTTAAGAATTCACCTGAAGGTAAAATAAACAGCAGTTCTCGTAGACGTGGTAGTGACACCATATCTGAAAAGGGGAGTAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACCAACTTCCACTTCCAGATCTTCACCCTGTAGGTGTAGGGCGAACAGACTCAGGGATAAGTGTGACAGAAAAATCAAAATTAGAGAGAAGCACCAAGACTTCTTCATTCCTACCCCTCCCTAGACCTGCATGTATCCGAAGAAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTCAAGTGATAGTGATGATCCCATCGATTCTCGTCAACGTAGTCCTCAGGCAACTGACTATGATATTGGGACTAGAAATGTGATAGATTCTACTGAACCTAGTGTAACTCTCAAGGACCAGTCTCCTACTGTTGTGCAAATAAATTCAAAAGAGGGCAAGAAAACGGAAACTCTTTCATTTCCTCATAAGAAACCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAATGTAACGAATTTACAAGTTCCTCGTCACGGGGCCTTCTTTAGCGCTCCAGATAGTTCCATGTCTAGTCCCTCTAGAAGTCCTATGAGGGTATTTAACACTGAGCAAGTGATGAACACAGCTGCTTGGGCTGGAAAGTCTCACCCAGATGTCATTTTAGGTGGGTCTGGCCACTGTTCTAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTTTTTTGGCAACAAAGTAGGGGTAGCCCTGAATATTCTCCAGTACCTAGTTCTAGAATGACTAGCCCCGGGCCAAGCTCCAGAATTCATAGTGGTGCTGTTACACCTATTCATCCAAGGGCAGGAGCAACACCGGCGGAGTCTCAAACTTGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAATGCTTCTCCATTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACCGAAACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTTGGTCGGGGAACGTTTGGGCACGTATATGTTGGTTTTAATAGCGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAGGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTACGGCATCCCAACATCGTGCAGTATTATGGTTCAGAAACAGTGGGTGATAAACTCTATATATATCTGGAATATGTATCTGGTGGCTCCATTTATAAATTACTACAAGAGTATGGACAATTTGGAGAGGTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGGCTTGCATATTTGCATGCTAAAACTACAGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCCAATGGTCGTGTTAAATTGGCAGACTTTGGGATGGCAAAGCATATCACAGGCCAACCATGTCCACTGTCATTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGCAACCTTGCCGTTGATATTTGGAGCTTGGGATGCACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCCATGTTTAAGATTGGTAATAGCAAAGAACTCCCAGCTATTCCAGTGCACCTCTCAAATGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCGCTTCACCGACCTACAGCTGCTCAACTTTTGGAGCATCCTTTTGTCAAATATGCTGCCCCTATAGAGAGGCCTATTTTGAGCTCTGAACCTTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGACTTTGGGTATTGGCCAATCGCGGATTACTTCTGTGGACTCCGATGGTAGACTTGCAGTTCATTCTTCAAGAATCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAACATTCCCAGAAACATATCATGTCCCGTTTCACCAATTGGAAGCCCTCTTTTGCACTCGCGATCACCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATATCGAGTCCCCGTACCACTTCGGGCTCGTCGACGCCTCTGACAGGATGTGGCGGTGCAATTCCGTACAACCACCTGAAACAAGCTATATACCTGCAAGAAGGTTTTGGAAGCATGCCAAAGTCATTAAATAACAGTCCATACAGCAGTGGTCTCTCTTTCCATGATTCAAATCCGGATATTTTTCGAGGGTTACAGCCTGGGACTCCCATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTCGGGGTCGGAAGGCGTGCTTACGGTGAATTGTATGACGGACAGCAGGTCTTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCAAGTTAAAACAAACCCTTCTCTTGATTTAAGTCCTACCCCTAAAACAATGTCTGGCCGCATGAATGGTATCTGA 2694 45.14 MPSWWGKPSSKEAKKKTGKESFIDSLHRKFKNSPEGKINSSSRRRGSDTISEKGSKSPLSRSPSPSKEVSRCQSFAERSRSHQLPLPDLHPVGVGRTDSGISVTEKSKLERSTKTSSFLPLPRPACIRRRPDPADLDGDLVTGSVSGESSSDSDDPIDSRQRSPQATDYDIGTRNVIDSTEPSVTLKDQSPTVVQINSKEGKKTETLSFPHKKPSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFNTEQVMNTAAWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIHSGAVTPIHPRAGATPAESQTCWPDEKQTHRLPLPPIAISNASPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSRESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGEVAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQPCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPAIPVHLSNDGKDFVRLCLQRNPLHRPTAAQLLEHPFVKYAAPIERPILSSEPSDATPGVTNGVKTLGIGQSRITSVDSDGRLAVHSSRISKAVLHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAIYLQEGFGSMPKSLNNSPYSSGLSFHDSNPDIFRGLQPGTPIFSEMIPENDILGKQVGVGRRAYGELYDGQQVLADRVSRQLLRDQVKTNPSLDLSPTPKTMSGRMNGI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 862964 871341 - Sed0008256.1 Sed13g0133 733643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0133 897 FunFam Mitogen-activated protein kinase kinase kinase 405 688 - -
Sed13g0133 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 666 IPR050538 -
Sed13g0133 897 SUPERFAMILY Protein kinase-like (PK-like) 405 747 IPR011009 -
Sed13g0133 897 MobiDBLite consensus disorder prediction 52 80 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 310 355 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 742 775 - -
Sed13g0133 897 Gene3D Transferase(Phosphotransferase) domain 1 405 681 - -
Sed13g0133 897 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0133 897 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Sed13g0133 897 MobiDBLite consensus disorder prediction 162 203 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 310 333 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 1 224 - -
Sed13g0133 897 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0133 897 SMART serkin_6 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0133 897 MobiDBLite consensus disorder prediction 369 409 - -
Sed13g0133 897 CDD STKc_MEKK1_plant 406 663 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 374 400 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 9 34 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 876 897 - -
Sed13g0133 897 MobiDBLite consensus disorder prediction 738 775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0843 Sed-Chr3:5091754 Sed13g0133 Sed-Chr13:862964 3.10E-51 dispersed
Sed05g0485 Sed-Chr5:3351227 Sed13g0133 Sed-Chr13:862964 0.00E+00 dispersed
Sed05g0486 Sed-Chr5:3351227 Sed13g0133 Sed-Chr13:862964 0.00E+00 dispersed
Sed10g0375 Sed-Chr10:2263683 Sed13g0133 Sed-Chr13:862964 2.50E-94 dispersed
Sed10g1296 Sed-Chr10:28472498 Sed13g0133 Sed-Chr13:862964 3.70E-90 dispersed
Sed13g0133 Sed-Chr13:862964 Sed14g1340 Sed-Chr14:22237849 6.80E-36 dispersed
Sed14g0232 Sed-Chr14:2566224 Sed13g0133 Sed-Chr13:862964 1.50E-119 transposed
Sed13g0133 Sed-Chr13:862964 Sed07g1017 Sed-Chr7:7384815 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80060 PF00069 Pkinase 6.90E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0133 K20717 - csv:101214961 1533.85