Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0162 ATGCCTAGTGGTGCAATTAGTGATCCAAGCTTTTTGACTTTCCCAATTCCTAGTTCTTTAAGGAAAATGGATGGCTATGGAGAAGTGTGTCTGCTTGGAGATAGCTTTGATCCGAGTGGAGTTGTGAGGGTGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATCGATGGTGCTGTATCGGGGGATGATCAAGATGGTAACAATGAACAACCACCTAAAAGGAAGAAGTATCATAGACATACTCCCCATCAGATCCAAGAGCTTGAAAATTTCTTCAAGGAATGCCCTCATCCGGATGATAAACAAAGGAGTGAGCTCAGTCGAAGGCTTAGTTTGGAGACGAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACGCAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCAAGAAAATGATAAGCTCCGTGCTGAGAATAGTGTGATGAAGGATGCAATTTCGAACCCGACATGCAATACGTGCGGTGGCCCTTCAATTCCTGTTCATCTGTCGTTCGAAGAACATCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTGTATAGTGTCACCAACAAGTTCTTGGGCTGGCCAGTTGTACCCTTTGGCAATCTTGTCTCTTCACCGAGTTCTGACTCATGCTTGGAACTTTCTGTAGGAAGAAATGGAATCGGAAGTTTGAGTTCGATATCTGATCCTATTCCTACGGGGTTTAACTCGGGAGACGGTATTTTCAGTGCTGGCCCTGTAATGCCTATTATTAAACCTGAAATAGGCATGCCAGGCAATGATACACCACTTGAGAGAACAATGTGTGTGGATCTTGCTTTGGCATCTATGAATGAATTGGTTAAGATGACTCAAATGGATTGTCCCCTTTGGATCAGAAGCTGGGATGGTGGTAGCAAAGAGTCGTTAAACCTCGACGAATATTCAAGGACATTTCCTACTTCGGCATGCACGAAGCACGGTAATTGGACTACAGAAGCCACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTCGTCGAGACGTTGATGGATGCAAACCGTTGGGCAGAAATGTTCCCTTGCTTAATTGCTAGAGCTACTACAATCGAAGTGATATCAAGTGGCATGGCAGGAACTAGAAATGGTGCACTACAATTGATGCATGCCGAACTTCGAGTACTGTCGCCACTCGTTCCTGTGCGTACGCTCAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTTTGGGCTGTAGTTGATGTTTCCATTGGTGAAAACTCGAACACCAACTCGTTTTTCAGTTGCAGGAGGCTCCCCTCGGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAGCATACAGAATATGATGAGACTGTCATACACCAACTTTACCGCCAGATGATCAGTTCAGGCATCGGCTTCGGTTCGCAACGGTGGCTTGCTACCCTTCAAAGACAGTGTGACTGTCTAGCAGTTCTCATGTCTTCTACCACGGAAGATCCTACAGGAATATCACCACATGGTAAGAGAAATATGCTAAAACTATCCCAGCGTATGGTCGATAACTTCTGTTCCGGTGTCGGTACTTCGACTTTGCACAAGTGGGATAAACTTGTTGCTGGAAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAACATCAATGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCTGCAACTTCTGTTTGGATGCCAGTAACTCACCAGAGGTTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGTGAGTGGGACATTTTATCCAACGGCAGGCCAATGGTAGAGATGCTTCACATCTCGAAAGGCCAGGGACCAGATAACCGTGTTTCTCTCTTGCGTGCTAATCCCATGAATGTTAATGAGAGCACCATGCTTATATTGCAAGAGACATGGAGTGATATATCAGGCTCACTAGTTGTTTACGCTCCAGTCGACACAGCCTCGGTGAATTTGGTGATGCGTGGAGGAGATTCTGCTTTTGTATCACTGTTACCTTCAGGATTCGTCATTCTCCCCAATAGCTCATCGAACTATGTGTGTACAAACAACGACAAAGACGGTTCGATCAAGTCTAACAATGGCTATGCTGGTGGATGCCTGCTCACAGTTACATTCCAAATTTTGGTGAATAGCATTCCAACTGCTAAACTCACAGTTGAATCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAATCGCCCTTCAAGTATCGTGA 2319 45.02 MPSGAISDPSFLTFPIPSSLRKMDGYGEVCLLGDSFDPSGVVRVREDEYDSRSGSDNIDGAVSGDDQDGNNEQPPKRKKYHRHTPHQIQELENFFKECPHPDDKQRSELSRRLSLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYSVTNKFLGWPVVPFGNLVSSPSSDSCLELSVGRNGIGSLSSISDPIPTGFNSGDGIFSAGPVMPIIKPEIGMPGNDTPLERTMCVDLALASMNELVKMTQMDCPLWIRSWDGGSKESLNLDEYSRTFPTSACTKHGNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIEVISSGMAGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGENSNTNSFFSCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQMISSGIGFGSQRWLATLQRQCDCLAVLMSSTTEDPTGISPHGKRNMLKLSQRMVDNFCSGVGTSTLHKWDKLVAGNISEDVKVMARKNINDPGEPPGIVLSAATSVWMPVTHQRLFAFLQDECLRSEWDILSNGRPMVEMLHISKGQGPDNRVSLLRANPMNVNESTMLILQETWSDISGSLVVYAPVDTASVNLVMRGGDSAFVSLLPSGFVILPNSSSNYVCTNNDKDGSIKSNNGYAGGCLLTVTFQILVNSIPTAKLTVESVETVNNLISCTIQKIKIALQVS 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1025312 1030879 - Sed0011235.1 Sed13g0162 733672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0162 772 CDD homeodomain 77 134 IPR001356 GO:0003677(InterPro)
Sed13g0162 772 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 770 IPR042160 -
Sed13g0162 772 SUPERFAMILY Bet v1-like 525 758 - -
Sed13g0162 772 SUPERFAMILY Bet v1-like 277 508 - -
Sed13g0162 772 Gene3D - 63 150 - -
Sed13g0162 772 ProSiteProfiles START domain profile. 277 511 IPR002913 GO:0008289(InterPro)
Sed13g0162 772 CDD START_ArGLABRA2_like 283 506 - -
Sed13g0162 772 FunFam Homeobox-leucine zipper protein GLABRA 2 286 507 - -
Sed13g0162 772 MobiDBLite consensus disorder prediction 35 84 - -
Sed13g0162 772 Pfam Homeodomain 77 132 IPR001356 GO:0003677(InterPro)
Sed13g0162 772 Coils Coil 128 160 - -
Sed13g0162 772 FunFam Homeobox-leucine zipper protein HDG1 63 150 - -
Sed13g0162 772 SUPERFAMILY Homeodomain-like 61 134 IPR009057 -
Sed13g0162 772 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677(InterPro)
Sed13g0162 772 SMART HOX_1 76 138 IPR001356 GO:0003677(InterPro)
Sed13g0162 772 SMART START_1 286 508 IPR002913 GO:0008289(InterPro)
Sed13g0162 772 MobiDBLite consensus disorder prediction 40 54 - -
Sed13g0162 772 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed13g0162 772 Pfam START domain 287 507 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0079 Sed-Chr9:618782 Sed13g0162 Sed-Chr13:1025312 5.90E-252 dispersed
Sed10g0620 Sed-Chr10:4136562 Sed13g0162 Sed-Chr13:1025312 2.20E-173 dispersed
Sed12g0199 Sed-Chr12:1112182 Sed13g0162 Sed-Chr13:1025312 6.80E-194 dispersed
Sed12g0200 Sed-Chr12:1114412 Sed13g0162 Sed-Chr13:1025312 6.30E-156 dispersed
Sed13g0162 Sed-Chr13:1025312 Sed14g1359 Sed-Chr14:22405122 5.30E-154 dispersed
Sed13g0162 Sed-Chr13:1025312 Sed07g1051 Sed-Chr7:7595883 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40323 PF01852 START 7.80E-48 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0162 K09338 - csv:101218216 1327.38