Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0163 ATGGCATCTTCTCGTATGGCCGGAGGAATAGCACAGTCTTCATCAAGGTCTGGGATTTTCTACCAAGGAGAAGGACATTCTTCAGCTATGGTTAGCTCTCACATGAGCCAATCATTTGCGAATTCATCGAATACGATTCCAGGAACTGGATGTTCTGGTTTTGGACCTGTTTCTGGAGACATGAATAATGCAGTTTTGAATAGTGTGGCAAATTCAGGGCCCAGTATGGGTGCAAGTTCATTGGTTACGGATGCAAACTCTGCTCTTTCAGGGGGGCCACATTTGCAAAAGAGTGCAAGCATCAATACAGAGTCATACATGCGTCTGCCTGCATCGCCTATGTCGTTCAATTCTAATAACATTAGCGTGTCGGGTTCCTCAGTTATAGATGGGTCCTGCGTAGTGCAGCAGAATTCTCAACATGACCAAAATATTCAACAAGTTCATCAACAGGCTCAGCAAGGTGCTTCTCATGCAACATCATTACCAACATCACATATAAGCCAAATATCACTTCCCATGGGCGCAAAACTTCAGGGATCTTTTATACCAGATCCAAATAATTATTCTCAGTTGCAGAAGAAACCACGACTGGATATAAAGCAGGAAGATGTGCTGCAACAGCAAGTTATGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCATAACTCACAGCTGCAAGCTTTATTTCAACAACAAAGAATGCGGCAACAGCAGCAGATTTTGCAGTCTCTACCTCAGTACAGAGCTCAGTTTCAGCAACAGCAACAACAGATACAGTTGAGGCAGCAATTGCAACAACAGCAGGCAATGCAGCCAGCATCACCCATGAAGCGCCCATATGATGGTGGTGTTTGTGCTCGTCGGCTGATGCAATATCTTTATCATCAACGGCAAAGGCCTCAGGAGAATAGTATAGCCTACTGGAGAAAGTTTGTAACAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCGTGGCAGTGTGATATCTGCGGTTCCAAGTCAGGAAGGGGCTTTGAGGCTACGTTTGAAGTACTTCCCAGGCTCAGCGAGATTAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCACAAGAAAGGAGATTTCCCTCTGGAGTTATGATGTTAGAATATCGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGCGTTGTTCGTGAGGGTCAGCTTCGTATCATATTCTCACAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCATCATGAAGAGCTTCTTCCACGTAGGTTGGTTGCACCTCAGGTGAATCAACTGTTACAGGTTGCTCAGAAATGCCAAAGCACAATTGCTGAAAGTGGTCCTGATGGTGCGTCTCAAAAAGATCTGCAGACGAATAGTACTATGGTCCTGACGGCTGGTCGTCAGCTTGCGAAGAGTCTCGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTGAGATGCTTGCAGATATCGGAGGTTGTGAACAGTATGAAAGATTTGATTGGTTTCTGCCGAGATCAAAAAGTGGGACCTATTGAGGGCTTGAAAAACTATCCAAGACATGCCACGGCAGCCAAGCTCCAGATGCAAAAAATGCAGGAGATGGAGCAGTTAGCGAGCGCTCAAGGTCTTCCCACGGACCGCAACACGATTAATAAGCTAATGACAATGCATCCTGAACTTGATAGCCATGGGATTAACAACCATCAGATGATAGGTAGAGGAGGAGGTATGAGTGGTTCACAAGCTGCTTTGGCACTGAATACCTACCAGAATATCCTCATGAGACAAAACTCTATGAATTCCAACCCTAGCCCACACCAACAGGAGCCCTCATCTTCTTTCAATAATTCCAACTATAATCCATCCCCTACCCTCCAGGGGACACCAACCTTGATGCCTGGATCAGTACAGAACTCCTTCGGTGGCTTTTCGAGCGTCCAGCAACCCTTGCAAAAGCAACCACAGCAGCTGCAACAGCAACAGCATCCACCAAATGCTGGCTCCATGCTCCAACAAAATCTTCCTCAGTCGATCCAAGGTAATCAAGCCATACAACAACAAATGATCCAACAACTACTGCAGATGTCGAGTAACGGTAAGAGCGGTGGCACACAACAGCAACCCCTTACTGGACCCAATGCAAATAGAAGTTTGGGAAGAAGAGGCATGGGGGGCTTTGTGGGCAACAACACCTCAGTTGCATCTTTGGCATCTGGAAATATGTCGGGAAGCAACAATGCCCCTGGCCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCGAATAGCGAGTCCTCTGCTGGTAACAGTGGCTTCAATCAAAAGGCATCAGATTTGCCGCAAGATCTTCACCTGCCAGAGGGTCTGGTTGAAGATATGGGTCAAGATTTCCCTGAAAACAGGTTTATTAACAATGATCTTGATGATGATTTGGGTTTTGTCTGGAAGGCTTGA 2565 45.61 MASSRMAGGIAQSSSRSGIFYQGEGHSSAMVSSHMSQSFANSSNTIPGTGCSGFGPVSGDMNNAVLNSVANSGPSMGASSLVTDANSALSGGPHLQKSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQHDQNIQQVHQQAQQGASHATSLPTSHISQISLPMGAKLQGSFIPDPNNYSQLQKKPRLDIKQEDVLQQQVMQQLFQRQDSMQSQNHNSQLQALFQQQRMRQQQQILQSLPQYRAQFQQQQQQIQLRQQLQQQQAMQPASPMKRPYDGGVCARRLMQYLYHQRQRPQENSIAYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFPSGVMMLEYRKAIQESVYEQLRVVREGQLRIIFSQDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTIAESGPDGASQKDLQTNSTMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASAQGLPTDRNTINKLMTMHPELDSHGINNHQMIGRGGGMSGSQAALALNTYQNILMRQNSMNSNPSPHQQEPSSSFNNSNYNPSPTLQGTPTLMPGSVQNSFGGFSSVQQPLQKQPQQLQQQQHPPNAGSMLQQNLPQSIQGNQAIQQQMIQQLLQMSSNGKSGGTQQQPLTGPNANRSLGRRGMGGFVGNNTSVASLASGNMSGSNNAPGPSRSNSFKAASNSESSAGNSGFNQKASDLPQDLHLPEGLVEDMGQDFPENRFINNDLDDDLGFVWKA 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1039241 1045906 + Sed0008095.1 Sed13g0163 733673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0163 854 Pfam LIM-domain binding protein 293 553 IPR029005 -
Sed13g0163 854 MobiDBLite consensus disorder prediction 140 166 - -
Sed13g0163 854 MobiDBLite consensus disorder prediction 735 752 - -
Sed13g0163 854 MobiDBLite consensus disorder prediction 766 814 - -
Sed13g0163 854 MobiDBLite consensus disorder prediction 735 817 - -
Sed13g0163 854 PANTHER LIM DOMAIN-BINDING PROTEIN 15 843 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Sed13g0163 854 MobiDBLite consensus disorder prediction 634 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3626 Sed-Chr1:65486910 Sed13g0163 Sed-Chr13:1039241 3.90E-259 dispersed
Sed07g1064 Sed-Chr7:7636741 Sed13g0163 Sed-Chr13:1039241 0.00E+00 dispersed
Sed07g1065 Sed-Chr7:7636741 Sed13g0163 Sed-Chr13:1039241 0.00E+00 dispersed
Sed11g1320 Sed-Chr11:28958595 Sed13g0163 Sed-Chr13:1039241 5.00E-95 dispersed
Sed11g1321 Sed-Chr11:28958595 Sed13g0163 Sed-Chr13:1039241 5.00E-95 dispersed
Sed13g0163 Sed-Chr13:1039241 Sed10g2090 Sed-Chr10:37332533 1.20E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0163 - - - 0.0