Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0173 ATGGATCTTTTTGCAAATTTATGCGAAGAATCATCGAGTTGTGAGAGTAGTAATTGCCGGCGGTTCTTTTTTTCCGACGAGGCGGTTATGTTGGCGGCGAGCAATCCGAAGAAGAGAGCCGGAAGGAAGAAATTCAAGGAAACGAGGCATCCGGTTTACAGAGGAGTTCGCCGGAGGAACTCCGGCAAGTGGGTCAGTGAAGTGAGGGAGCCGAATAAAAAGTCGAGGATTTGGCTCGGGACCTTCCCGACAGCGGAGATGGCCGCTCGGGCTCACGATGTGGCGGCGATGGCACTTCGGGGTCGCTCCGCTTGTCTCAATTTTGCCGATTCTGCGTGGCGGCTCCCTTTGCCGGCTTCTGCCGATGCCAGGGATATCCAAAAGGCGGCGGCGGAGGCGGCGGAGGCATTCCGATCCGTTGAATCAGATGGGTCTTCCGTCGATGATTCAACAGTGGAAAGTACGATAACGGTGGAGACGGCGGTGGCGGTGCCGGAAAACTTGCTTTACGTAGATGATGAGGCGGCTTTTGGGCTGCCGGGATTGTTGGAAGAAATGGCTGCTGGGATGATGTTGCCTCCACCTCAGCACATTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 642 53.89 MDLFANLCEESSSCESSNCRRFFFSDEAVMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVSEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPLPASADARDIQKAAAEAAEAFRSVESDGSSVDDSTVESTITVETAVAVPENLLYVDDEAAFGLPGLLEEMAAGMMLPPPQHIRDDMDFYSDVSLWSY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1119894 1120760 + Sed0008036.1 Sed13g0173 733683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0173 213 CDD AP2 53 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0173 213 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0173 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 213 IPR045277 GO:0003700(InterPro)
Sed13g0173 213 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Sed13g0173 213 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0173 213 Pfam AP2 domain 51 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0173 213 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0173 213 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677(InterPro)
Sed13g0173 213 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0173 213 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3624 Sed-Chr1:65439806 Sed13g0173 Sed-Chr13:1119894 3.50E-57 dispersed
Sed05g0530 Sed-Chr5:3848451 Sed13g0173 Sed-Chr13:1119894 1.40E-58 dispersed
Sed05g0835 Sed-Chr5:6619376 Sed13g0173 Sed-Chr13:1119894 3.80E-52 dispersed
Sed07g1073 Sed-Chr7:7770187 Sed13g0173 Sed-Chr13:1119894 1.70E-77 dispersed
Sed10g1110 Sed-Chr10:12217342 Sed13g0173 Sed-Chr13:1119894 6.60E-29 dispersed
Sed12g1829 Sed-Chr12:29557891 Sed13g0173 Sed-Chr13:1119894 2.40E-27 dispersed
Sed13g0173 Sed-Chr13:1119894 Sed11g1368 Sed-Chr11:29693351 2.70E-15 dispersed
Sed01g3918 Sed-Chr1:68377726 Sed13g0173 Sed-Chr13:1119894 1.10E-29 wgd
Sed13g0173 Sed-Chr13:1119894 Sed05g0834 Sed-Chr5:6581566 2.30E-30 wgd
Sed13g0173 Sed-Chr13:1119894 Sed07g1072 Sed-Chr7:7742435 2.90E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40325 PF00847 AP2 5.40E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0173 - - - 0.0