Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0179 ATGTTTGAGACAATGGCAAAAAATACAACAGTTTTGATTCTAATGATGTTTGCAATTTGTCTGTCTGAAGGAGTTCTTGATATCAATTATTACTCAAAAACATGTCCAAATGCTGAGAAAATCATCCTCCAAACTGTCAACAATGCTTCCGTTTTCGACCCCAAAGTTCCCGCCCGCCTTCTCAGGCTCTTCTTTCATGATTGTTTCATAAGGGGATGCGATGCATCGGTGTTGATAGCTTCGACACCGGGGAACCAGGCGGAGAAAGATGCGCCTCCGAACTTATCGTTAGGGTCGTTCTATGTGATAGATGACGCCAAAGCCAAGCTTGAAAGTGCTTGCCCACATACTGTTTCTTGTGCTGATATTGTTGCTATTGCTGCTAGAGATGTTGTTACTCTGTCAGGGGGCCCAAATTGGAGTGTACTAAAAGGAAGAAAAGATGGGAAGATTTCAAATGCTTCTGAAACAATAAACTTACCAGCTCCAGTTTTCAATGTATCTCAACTAATCCAAAGCTTTGGAAACAGAGGATTACAAGTCAAAGACATGGTTGCCTTATCTGGGGCCCACACTCTTGGATTCTCACACTGTTCTTCATTTCAATCTAGGCTTTCCAATTTCAGCTCAATTCATGATACTGATCCTACTTTGGAATCTGGGTTTGCCCAAATCCTCAAAGGCAAATGTCCAAAACAAAATTTGGACAAAAATGCAGGCCAGTTTTTGGACCCAACTTCCTCAAAGTTTGACAATTTGTATTACAAGAGACTGTTGGAAGGAAAAGGGGTGTTTGGTTCAGATCAGTCTCTGTTTGGAGATTCTAGAACTAAAGAGATTGTGGGGCTGTTTGCCAAAGATCAGAACTTGTTCTTTCAGGAATTTGCTGCTTCAATGGTGAAATTGGGTAATGTTGGGGTTATTGAAAATGGCAATGTTAGAGTCAATTGCAGGGTGGTGAATTGA 966 41.2 MFETMAKNTTVLILMMFAICLSEGVLDINYYSKTCPNAEKIILQTVNNASVFDPKVPARLLRLFFHDCFIRGCDASVLIASTPGNQAEKDAPPNLSLGSFYVIDDAKAKLESACPHTVSCADIVAIAARDVVTLSGGPNWSVLKGRKDGKISNASETINLPAPVFNVSQLIQSFGNRGLQVKDMVALSGAHTLGFSHCSSFQSRLSNFSSIHDTDPTLESGFAQILKGKCPKQNLDKNAGQFLDPTSSKFDNLYYKRLLEGKGVFGSDQSLFGDSRTKEIVGLFAKDQNLFFQEFAASMVKLGNVGVIENGNVRVNCRVVN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1167711 1170978 + Sed0011651.1 Sed13g0179 733689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0179 321 Gene3D - 29 321 - -
Sed13g0179 321 PANTHER - 12 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 FunFam Peroxidase 29 175 - -
Sed13g0179 321 FunFam Peroxidase 161 302 - -
Sed13g0179 321 SUPERFAMILY Heme-dependent peroxidases 26 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Sed13g0179 321 ProSiteProfiles Plant heme peroxidase family profile. 25 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 CDD secretory_peroxidase 26 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g0179 321 Gene3D Peroxidase, domain 2 161 302 - -
Sed13g0179 321 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0179 321 Pfam Peroxidase 46 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3086 Sed-Chr3:47584931 Sed13g0179 Sed-Chr13:1167711 7.20E-73 dispersed
Sed11g1105 Sed-Chr11:26759992 Sed13g0179 Sed-Chr13:1167711 2.00E-91 dispersed
Sed13g0179 Sed-Chr13:1167711 Sed14g0821 Sed-Chr14:15904860 3.20E-68 dispersed
Sed14g1205 Sed-Chr14:21299923 Sed13g0179 Sed-Chr13:1167711 6.90E-13 dispersed
Sed13g0179 Sed-Chr13:1167711 Sed14g1212 Sed-Chr14:21362100 5.40E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0179 K00430 - csv:101210306 506.138