Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0185 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATTGAAAATGCGACAAGTCGACAAGTAACATTTTCAAAGCGTAGAAATGGATTATTGAAGAAGGCTTATGAATTATCTGTGCTGTGTGAAGCTGAAGTTGCAGTCATTATTTTCTCTCAAAAAGGCCGTCTCTATGAATTTGCCAGCTCTGAAATGCCTAGGATTATAGATCGTTATCGCAAATGTGCAAGAGAAGGGAAGAACAACGACAAGTTTGATAAACAACTTCAATTACAGCATTTGAGGCATGAAGCTGAAAGCTTTACTAAGAAGATCGAGTTGATGCAACTTTATCAACGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCACTTGATGAACTTCAAGTTCTTGAAGCTCAGCTTCAGCGAAGCTTGTTCCAAATTAGGGCCAGAAAGGCTCAGCTATACGAGGAACAGATGCGACAACTACAAGAAAAGGAAAAACTCCTTCAAGAAGAGAACAGAAAATTATCTTTAAAGGAAAAACTCCTTCGAGAAGAGAACAGGAAATTATCTTTAAAGGCCGCCGCTCAAGGTGGCGCCGCCGGTACCGGCTGCCGTAGGAGCTCAAGTCAGGAAGTTGACACCCAATTGTTCATTTGA 636 40.88 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCEAEVAVIIFSQKGRLYEFASSEMPRIIDRYRKCAREGKNNDKFDKQLQLQHLRHEAESFTKKIELMQLYQRKLLGYGLDSCSLDELQVLEAQLQRSLFQIRARKAQLYEEQMRQLQEKEKLLQEENRKLSLKEKLLREENRKLSLKAAAQGGAAGTGCRRSSSQEVDTQLFI 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1200741 1208240 + Sed0024599.2 Sed13g0185 733695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0185 211 Pfam K-box region 84 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0185 211 Gene3D - 14 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 MobiDBLite consensus disorder prediction 192 211 - -
Sed13g0185 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0185 211 Coils Coil 143 181 - -
Sed13g0185 211 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g0185 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0185 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Sed13g0185 211 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0185 211 MobiDBLite consensus disorder prediction 195 211 - -
Sed13g0185 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0223 Sed-Chr12:1232327 Sed13g0185 Sed-Chr13:1200741 1.20E-36 dispersed
Sed12g0224 Sed-Chr12:1238005 Sed13g0185 Sed-Chr13:1200741 1.10E-35 dispersed
Sed13g0185 Sed-Chr13:1200741 Sed14g1542 Sed-Chr14:23620914 2.90E-30 dispersed
Sed13g0185 Sed-Chr13:1200741 Sed13g0187 Sed-Chr13:1215684 1.00E-27 proximal
Sed13g0184 Sed-Chr13:1200419 Sed13g0185 Sed-Chr13:1200741 6.30E-57 tandem
Sed01g3935 Sed-Chr1:68482533 Sed13g0185 Sed-Chr13:1200741 3.90E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40328 PF01486 K-box 3.00E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0185 - - - 0.0