Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0187 ATGGGAAGAGGAAAAGTTGTTCTTGAGAGGATAGAGAACAAAGTGAATCGCCAAGTGACATTTTCAAAGAGAAGAAATGGATTGTTGAAGAAAGCTTATGAGTTATCTGTGCTTTGTGAGGTTGATGTTGCTCTTATTGTCTTCTCGAGCCGCGGCAAACTCTTTGAATTTGGTAGCACGGATATGAACAAGATCTTTGAAAGGTACCACCAACAATGTTACACCTCGGGGTCAAATACCAATCTCGATGAACATGATATTCAGATTGAAGAGCTGTCAAAGCTGAGGGCCAAATATGAATCTCTTAAGCGTTCTCATAGTAACTTTCTTGGGGAAGAACTTGAATCACTCAGCCTAAAAGAGTTGTGCAATCTTGAGAAACAGTTGGACAAAACTCTTACACAAGCTAGACAGCAGAAGGCTGAGATGATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGAGCAGGACCTTGGAGATGAAAATACTCAGCTCAAGTCTCAGCTTGAAGGAGTGCAACAACAGAAGCAACCAAATGATGATGGCCTGGGAGATCCAAACATGACCAGCAGGTACTTTGATACCCAAGGAGAGGCTGAAGCAAGGGTCATGATTGGAGCAGGGAGTAACTTGATCCCAGATTGGCTTCGCTATGATTGA 660 42.58 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCEVDVALIVFSSRGKLFEFGSTDMNKIFERYHQQCYTSGSNTNLDEHDIQIEELSKLRAKYESLKRSHSNFLGEELESLSLKELCNLEKQLDKTLTQARQQKAEMMLQKLADLRKMEQDLGDENTQLKSQLEGVQQQKQPNDDGLGDPNMTSRYFDTQGEAEARVMIGAGSNLIPDWLRYD 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1215684 1222083 - Sed0014292.1 Sed13g0187 733697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0187 219 MobiDBLite consensus disorder prediction 169 191 - -
Sed13g0187 219 Coils Coil 119 139 - -
Sed13g0187 219 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0187 219 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Sed13g0187 219 Coils Coil 148 175 - -
Sed13g0187 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g0187 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0187 219 Pfam K-box region 89 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0187 219 Coils Coil 82 105 - -
Sed13g0187 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0187 219 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0290 Sed-Chr9:2458512 Sed13g0187 Sed-Chr13:1215684 1.30E-62 dispersed
Sed09g0291 Sed-Chr9:2458512 Sed13g0187 Sed-Chr13:1215684 8.00E-52 dispersed
Sed09g0292 Sed-Chr9:2481649 Sed13g0187 Sed-Chr13:1215684 5.20E-42 dispersed
Sed09g0293 Sed-Chr9:2510114 Sed13g0187 Sed-Chr13:1215684 1.30E-55 dispersed
Sed09g0294 Sed-Chr9:2523695 Sed13g0187 Sed-Chr13:1215684 1.10E-49 dispersed
Sed09g0382 Sed-Chr9:3457690 Sed13g0187 Sed-Chr13:1215684 4.40E-38 dispersed
Sed13g0187 Sed-Chr13:1215684 Sed14g1542 Sed-Chr14:23620914 1.70E-33 dispersed
Sed13g0185 Sed-Chr13:1200741 Sed13g0187 Sed-Chr13:1215684 1.00E-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40329 PF01486 K-box 2.80E-20 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0187 K09264 - csv:101212022 315.464