Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0195 ATGGAGGAGAAAGAAATCGAAGTTTCTAGGTTTACAATTACTAACAACAAAACCCTAGAGAGTTTCCAGTCAGCTCCAAGAACAGAAACCCTAAATCTCACCGATGAGCCGAAAGTAACAGAGGTCGCGGCGGCTGCTACAGCTGCACCGCCGGGATTCACGGCGGCGGGCAATCAACCAGCGGCGAGCGCGGCGGTTTCCGGTTTGGAAACGAAGAAGAAGAGAGGGAGGCCGAGAAAGTACGGGCAGGACGGGAAGCGGTCACTAACACTGGCGCTGTCTCCGATGCCGATATCGACGTCGATTCCACTGACCGGAGAGTTTCCGACATGGAAACGAGATAACGAGATGTCTCTAGCGATTATCAAGAAACCGCAGAGATTCGAGTTTGAGAATCCTGGTCTTAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGCATAATTTCAAGTGTTACACTTCAACAGGCAACTACTTCGGGAGGTACCTTAACGTATGAGGGTAATTTTGAAATACTCGCATTGACGGGATCGTTTATACCCACACAGAATGGAGCTATAAAGAGCAGATGCGGTGGGATGAGCGTCTCTCTAGCGGGTCAAGATGGGCGAGTCGTTGGGGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTTGTCGGTAGCTTCCTTCCTGGTCACCAGCAAGAACAGCAACCTAAGAAGCCTCGAAATGAGTCCGCTACCGTTTTCTTTCCTCCCCCCATCAGCACCATCACTGGTGAAGAAATGAAGGCAATGTACACTGGTGGTATCAAGCCTATTCTCACAACGCCGCCATCGCAAAGCCCGGTGACCGGCTTCAAAATCTCCTCCACTGACAATTTGCCTCTATCTGAACAAGAACCCAAAACACAAAGTCAATCAAACTGCGAGATTTCTTGTTGA 1038 49.13 MEEKEIEVSRFTITNNKTLESFQSAPRTETLNLTDEPKVTEVAAAATAAPPGFTAAGNQPAASAAVSGLETKKKRGRPRKYGQDGKRSLTLALSPMPISTSIPLTGEFPTWKRDNEMSLAIIKKPQRFEFENPGLRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGIISSVTLQQATTSGGTLTYEGNFEILALTGSFIPTQNGAIKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQQPKKPRNESATVFFPPPISTITGEEMKAMYTGGIKPILTTPPSQSPVTGFKISSTDNLPLSEQEPKTQSQSNCEISC 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1277102 1282324 - Sed0023341.1 Sed13g0195 733705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0195 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Sed13g0195 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 267 - -
Sed13g0195 345 ProSiteProfiles PPC domain profile profile. 142 285 IPR005175 -
Sed13g0195 345 CDD DUF296 146 260 IPR005175 -
Sed13g0195 345 MobiDBLite consensus disorder prediction 64 85 - -
Sed13g0195 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 312 IPR039605 GO:0003680(InterPro)
Sed13g0195 345 Gene3D - 147 275 - -
Sed13g0195 345 MobiDBLite consensus disorder prediction 305 345 - -
Sed13g0195 345 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1101 Sed-Chr7:8068997 Sed13g0195 Sed-Chr13:1277102 6.50E-109 dispersed
Sed12g0242 Sed-Chr12:1406829 Sed13g0195 Sed-Chr13:1277102 8.80E-56 dispersed
Sed13g0195 Sed-Chr13:1277102 Sed13g1199 Sed-Chr13:17102459 1.10E-42 dispersed
Sed01g3955 Sed-Chr1:68666267 Sed13g0195 Sed-Chr13:1277102 6.10E-17 wgd
Sed13g0195 Sed-Chr13:1277102 Sed05g0863 Sed-Chr5:6958647 7.60E-68 wgd
Sed13g0195 Sed-Chr13:1277102 Sed07g1100 Sed-Chr7:8068997 1.40E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0195 - - - 0.0