Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0206 | ATGACGACCGAGTTCAACTCTCATATGCGTAGGGATCATGATAATGATTCACCAGCCAACCGTAGAGAGCGTAGTATACAGATGAGGCGATTAGCAGCAGCAAATCCATCGCCGCGCTCGACGAGTACTCGTCACCCGCGCCAAGAGATTCAAATTCAGAATGCAGGTTTCGAGGGGATGGCACGGAAGATATCGTCGTCTTCATCGTCGGTGCCGGAGGACATTACGCCCGAGCCAGTGTTCGGGATGATGTCGGTGTCCGGGAGGACACGTGATCTGGAGGACGAAATAACCACAACCACATGGCTCATTCGTCCGGAAAACAGCCGCCCGCGATTGCTGCAGTTTTTGGCCGTCTATGATGGACATGGAGGCCCTTACGTGTCAGCGCTATGTGCGGAGAAGATGCACGAGTTCATGCTAGAGGAATTGGCGCGCGCGGAAACTTGTGGCGCTGCGGCAGCGGTGATGGCGGCAGAGGAGGAGGAGGCGACATGGAGAATCGTGATGCGGCGGAGCTTTGAGAGGATAGACGAACTGGCACTCAACACTTGTGTCTGCGGGATCCCCGTAGGCGAGTGCGGGTGCGTTCCAACCGAGGCAGCACCCGGCGGGTCCACCGTCGTGGTCGCCGTGCTCACTCCACATCACATCGTCGTCGCCAACTGCGGTGACTCACGCGCCGTCCTGAGCCGCGGAGGAAGGACAATTCCCCTTTCCGCTGATCACAAGCCTGATAGAGCTGATGAACTCGAAAGGATCGAAAGGGCCGGTGGACGCGTGATTTTCGGAAATGGAGCTCGGGTTGAAGGCATCCTTGCAATCGACAAATTTCTGAAGTCAGTTATAATATCTGAGCCAGAAATTACTTTCACCAAAAGAGAATCAGATGATGAATGTTTAATACTTGGAAGTGATGGTTTATGGGATGTTCTTTCAAGTGAGAGGGCTTGTGAGGTAGCTCGAAAATGTCTTGAAGGCGAAGACGTCGCTGCTTCTATTGCTGCAATAGACCTCAACGCCGTGCCTGAAATTGAAGTCGACACTGTATGCCCCTCTCAAAGCGCACTGGCTGCATCACTGCTTACTCGTCTTGCTTTGGGGCGAAAAAGCCCGAACAATATCAGTGTTATCGTTGTTGATCTAAAGAGGAGCTAA | 1158 | 53.28 | MTTEFNSHMRRDHDNDSPANRRERSIQMRRLAAANPSPRSTSTRHPRQEIQIQNAGFEGMARKISSSSSSVPEDITPEPVFGMMSVSGRTRDLEDEITTTTWLIRPENSRPRLLQFLAVYDGHGGPYVSALCAEKMHEFMLEELARAETCGAAAAVMAAEEEEATWRIVMRRSFERIDELALNTCVCGIPVGECGCVPTEAAPGGSTVVVAVLTPHHIVVANCGDSRAVLSRGGRTIPLSADHKPDRADELERIERAGGRVIFGNGARVEGILAIDKFLKSVIISEPEITFTKRESDDECLILGSDGLWDVLSSERACEVARKCLEGEDVAASIAAIDLNAVPEIEVDTVCPSQSALAASLLTRLALGRKSPNNISVIVVDLKRS | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1347815 | 1350822 | + | Sed0018429.1 | Sed13g0206 | 733716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0206 | 385 | Pfam | Protein phosphatase 2C | 81 | 331 | IPR001932 | - | |
Sed13g0206 | 385 | ProSiteProfiles | PPM-type phosphatase domain profile. | 80 | 382 | IPR001932 | - | |
Sed13g0206 | 385 | SMART | PP2C_4 | 70 | 380 | IPR001932 | - | |
Sed13g0206 | 385 | Gene3D | - | 72 | 385 | IPR036457 | - | |
Sed13g0206 | 385 | ProSitePatterns | PPM-type phosphatase domain signature. | 116 | 124 | IPR000222 | GO:0043169(InterPro) | |
Sed13g0206 | 385 | SUPERFAMILY | PP2C-like | 80 | 383 | IPR036457 | - | |
Sed13g0206 | 385 | CDD | PP2Cc | 80 | 382 | IPR001932 | - | |
Sed13g0206 | 385 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
Sed13g0206 | 385 | PANTHER | PROTEIN PHOSPHATASE | 44 | 381 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed13g0206 | 385 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed13g0206 | 385 | FunFam | Protein phosphatase 2C 50 | 107 | 385 | - | - | |
Sed13g0206 | 385 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1820 | Sed-Chr12:29419803 | Sed13g0206 | Sed-Chr13:1347815 | 4.40E-45 | dispersed | |
Sed12g1821 | Sed-Chr12:29419803 | Sed13g0206 | Sed-Chr13:1347815 | 3.60E-26 | dispersed | |
Sed13g0206 | Sed-Chr13:1347815 | Sed13g1941 | Sed-Chr13:24319361 | 1.00E-25 | dispersed | |
Sed13g0206 | Sed-Chr13:1347815 | Sed07g1086 | Sed-Chr7:7969539 | 2.10E-106 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0206 | K14497 | - | csv:101206634 | 428.713 |