Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0206 ATGACGACCGAGTTCAACTCTCATATGCGTAGGGATCATGATAATGATTCACCAGCCAACCGTAGAGAGCGTAGTATACAGATGAGGCGATTAGCAGCAGCAAATCCATCGCCGCGCTCGACGAGTACTCGTCACCCGCGCCAAGAGATTCAAATTCAGAATGCAGGTTTCGAGGGGATGGCACGGAAGATATCGTCGTCTTCATCGTCGGTGCCGGAGGACATTACGCCCGAGCCAGTGTTCGGGATGATGTCGGTGTCCGGGAGGACACGTGATCTGGAGGACGAAATAACCACAACCACATGGCTCATTCGTCCGGAAAACAGCCGCCCGCGATTGCTGCAGTTTTTGGCCGTCTATGATGGACATGGAGGCCCTTACGTGTCAGCGCTATGTGCGGAGAAGATGCACGAGTTCATGCTAGAGGAATTGGCGCGCGCGGAAACTTGTGGCGCTGCGGCAGCGGTGATGGCGGCAGAGGAGGAGGAGGCGACATGGAGAATCGTGATGCGGCGGAGCTTTGAGAGGATAGACGAACTGGCACTCAACACTTGTGTCTGCGGGATCCCCGTAGGCGAGTGCGGGTGCGTTCCAACCGAGGCAGCACCCGGCGGGTCCACCGTCGTGGTCGCCGTGCTCACTCCACATCACATCGTCGTCGCCAACTGCGGTGACTCACGCGCCGTCCTGAGCCGCGGAGGAAGGACAATTCCCCTTTCCGCTGATCACAAGCCTGATAGAGCTGATGAACTCGAAAGGATCGAAAGGGCCGGTGGACGCGTGATTTTCGGAAATGGAGCTCGGGTTGAAGGCATCCTTGCAATCGACAAATTTCTGAAGTCAGTTATAATATCTGAGCCAGAAATTACTTTCACCAAAAGAGAATCAGATGATGAATGTTTAATACTTGGAAGTGATGGTTTATGGGATGTTCTTTCAAGTGAGAGGGCTTGTGAGGTAGCTCGAAAATGTCTTGAAGGCGAAGACGTCGCTGCTTCTATTGCTGCAATAGACCTCAACGCCGTGCCTGAAATTGAAGTCGACACTGTATGCCCCTCTCAAAGCGCACTGGCTGCATCACTGCTTACTCGTCTTGCTTTGGGGCGAAAAAGCCCGAACAATATCAGTGTTATCGTTGTTGATCTAAAGAGGAGCTAA 1158 53.28 MTTEFNSHMRRDHDNDSPANRRERSIQMRRLAAANPSPRSTSTRHPRQEIQIQNAGFEGMARKISSSSSSVPEDITPEPVFGMMSVSGRTRDLEDEITTTTWLIRPENSRPRLLQFLAVYDGHGGPYVSALCAEKMHEFMLEELARAETCGAAAAVMAAEEEEATWRIVMRRSFERIDELALNTCVCGIPVGECGCVPTEAAPGGSTVVVAVLTPHHIVVANCGDSRAVLSRGGRTIPLSADHKPDRADELERIERAGGRVIFGNGARVEGILAIDKFLKSVIISEPEITFTKRESDDECLILGSDGLWDVLSSERACEVARKCLEGEDVAASIAAIDLNAVPEIEVDTVCPSQSALAASLLTRLALGRKSPNNISVIVVDLKRS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1347815 1350822 + Sed0018429.1 Sed13g0206 733716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0206 385 Pfam Protein phosphatase 2C 81 331 IPR001932 -
Sed13g0206 385 ProSiteProfiles PPM-type phosphatase domain profile. 80 382 IPR001932 -
Sed13g0206 385 SMART PP2C_4 70 380 IPR001932 -
Sed13g0206 385 Gene3D - 72 385 IPR036457 -
Sed13g0206 385 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169(InterPro)
Sed13g0206 385 SUPERFAMILY PP2C-like 80 383 IPR036457 -
Sed13g0206 385 CDD PP2Cc 80 382 IPR001932 -
Sed13g0206 385 MobiDBLite consensus disorder prediction 34 50 - -
Sed13g0206 385 PANTHER PROTEIN PHOSPHATASE 44 381 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g0206 385 MobiDBLite consensus disorder prediction 1 28 - -
Sed13g0206 385 FunFam Protein phosphatase 2C 50 107 385 - -
Sed13g0206 385 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1820 Sed-Chr12:29419803 Sed13g0206 Sed-Chr13:1347815 4.40E-45 dispersed
Sed12g1821 Sed-Chr12:29419803 Sed13g0206 Sed-Chr13:1347815 3.60E-26 dispersed
Sed13g0206 Sed-Chr13:1347815 Sed13g1941 Sed-Chr13:24319361 1.00E-25 dispersed
Sed13g0206 Sed-Chr13:1347815 Sed07g1086 Sed-Chr7:7969539 2.10E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0206 K14497 - csv:101206634 428.713