Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0248 ATGGCTGATTCCACTGCTCTTCCTCCTCGCTGCGAAGCCGGAATCATCAGAAGTATACGCCTGGAGAATTTCATGTGTCACAGCAACTTGCACATTGAGCTTGGCGAGTGGCTCAATTTCATTACTGGCCAGAACGGAAGTGGTAAGAGTGCTATACTAACTGCTTTATGTGTTGCATTTGGCTGTCGAGCAAAAGGAACCCAAAGGGCATCCACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAATTGTTAAATAGGGGGGAGGATGCGTTTAAGCCTGAAATATATGGTAATCTTATAACCATAGAGAGAAGGATTTCCGAAGCCTCCAGTGGCATTGTTTTGAAAAATCGCCAAGGAAAAAAAGTTGCCAGTCGGAGGGATGAACTACGGGAGCTAGTAGAACATTTTAATATAGATGTTGAGAACCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATAACAAGGATAAATTTAAGTTCTTCTTCAAGGCTACTCTTCTTCAGCAAGTTGATGACCTGTTGAAAAATGTTTTTGGTCAATTGAGATCTGCAAACGCGCTTGTTGATGACTTGGAGTCTACTATACGACCTGTGGAGAAGGAACTAAATGAGCTGCGAGGAAAAATAAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTTCAACAATTAAAGAAAAAGCTTGCATGGTCATGGGTATACGATGTTGACAAACAACTTCAGGGACAAAGTACAAAAATAGGAAAGCTCAAAGATCGCATTCCTATTTGTCGGGCGAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAGCGCTTTATCGAGAAGAAGGGTCAAATTGCAAGCATGATGGAGAGAACTTCCGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAACACGGACTTGAAGAACAGCATGGCCGCAAACTGAACTACATTCAAAACATGGCAAAACGTGTTAGGCTGCTTGAGCAACAAGTTCATGATATTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGACCGAAGCTGCTAAGTCAACAGTTATGAGGTTGAAGGAGGAGGAAAATAGCTTATTGGATAGCCTACATAATGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGGTCGAAGGTTATGAGAAAAAGTATAAAGAATTTTCTCAGTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGACAGAGTCATTCAGTTATTGCGTGCGATTGAGAGACAACATCGAAGATTCAAGACACCTCCCATTGGTCCAATTGGGGCCCATCTGAATTTGGTCAATGGTGATATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACCGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGATGTTAATTATAGGCATCTCCCAATTATCATCTATGACTTTTCACGACCACTGTTAGATATTCCACCTCACATGCTTCCTCAAACAAGGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCATACTGTAATGAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGCAGGTAAATCAGTCGCATTTGACCAACGTGTCTCGAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCTCCAGTTAGAAGACCTAGAAGCGGCAGACTTTGTAGTTCTTTTGATGAACAGATTAAAAGTCTTGAAAAAGATGCATCAAATGTGAAAGAAGAAGGCGAGCAATGTAGGAAGAGGAAGAGAGCTACAGAAGAACAACTTCGGGATGTTGAAGGCAACCTAAACAATGCAAAGAGGAGATGTCAGAGTGCGGAACGATTCTTAATGTCCAAAAATTTGGAGTTACAAGATTTACGAAAATCAAAAGTTGCTGAAACTAGTTCGTTACCTGCATCAAATGTTGACGAACTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAATTCTCTTCTGGAAAAGTTTAGAGTTAGAATGAAAGAAGCGGAAGCTAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTGTGTGAGTCGGCGAAAGGAGAAGTTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGATTTGCATTCTGCAGAAAAGGAGAAGAATCATTATGAAGGTATTATGAATAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAAACAGCATCAGGAGCTTGAGCTCCATCGTAAGGAGAGCTATAATAAGGCTTCAATAATATGTCCTGAAAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCAGAACAACTCAGTGCACAATTATCGAGGCTAAATCAAAGACTTAGCAACGAGACCCGACGATGTTCTGAATCTCTGGAAGACCTGCGAATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGGCGTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCAACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAGTCAATTATGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTACTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAGATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGACGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCTTTGGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATCGGAATGGTAAAACATGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 40.84 MADSTALPPRCEAGIIRSIRLENFMCHSNLHIELGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIQVELLNRGEDAFKPEIYGNLITIERRISEASSGIVLKNRQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFFKATLLQQVDDLLKNVFGQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQGQSTKIGKLKDRIPICRAKIDHQLGLAEKLRERFIEKKGQIASMMERTSEVRRMKDELQETLSLATREKHGLEEQHGRKLNYIQNMAKRVRLLEQQVHDIHEQHIRNTQAEESEIEEKLKELESETEAAKSTVMRLKEEENSLLDSLHNGRSEIKKIAEEVEGYEKKYKEFSQSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHRRFKTPPIGPIGAHLNLVNGDMWAPAVESAIGRLLNAFIVTDHRDSLLLRGCANDVNYRHLPIIIYDFSRPLLDIPPHMLPQTRHPTTLSVIHSENHTVMNVLIDKGDAERQVLVKDYDAGKSVAFDQRVSNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDEQIKSLEKDASNVKEEGEQCRKRKRATEEQLRDVEGNLNNAKRRCQSAERFLMSKNLELQDLRKSKVAETSSLPASNVDELHQEISKIQEEIQENNSLLEKFRVRMKEAEAKAKDLKVSFENLCESAKGEVDAFEEAERDMLQIERDLHSAEKEKNHYEGIMNNKVLFDIKEAEKQHQELELHRKESYNKASIICPESEIEALGDWDGSTPEQLSAQLSRLNQRLSNETRRCSESLEDLRMMYEKKERTIIRKQQAYKSFREKLNACQKALEQRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKHGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1639361 1655306 - Sed0013674.1 Sed13g0248 733758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0248 1052 Coils Coil 802 822 - -
Sed13g0248 1052 Coils Coil 362 396 - -
Sed13g0248 1052 Coils Coil 766 786 - -
Sed13g0248 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 1042 IPR027417 -
Sed13g0248 1052 Coils Coil 203 223 - -
Sed13g0248 1052 Coils Coil 312 332 - -
Sed13g0248 1052 Coils Coil 340 360 - -
Sed13g0248 1052 Gene3D - 628 803 - -
Sed13g0248 1052 Pfam RecF/RecN/SMC N terminal domain 16 1044 IPR003395 -
Sed13g0248 1052 Gene3D - 854 1049 IPR027417 -
Sed13g0248 1052 Coils Coil 628 683 - -
Sed13g0248 1052 Coils Coil 404 438 - -
Sed13g0248 1052 Coils Coil 710 758 - -
Sed13g0248 1052 Coils Coil 900 920 - -
Sed13g0248 1052 Gene3D - 15 272 IPR027417 -
Sed13g0248 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Sed13g0248 1052 Coils Coil 868 888 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0591 Sed-Chr7:4494478 Sed13g0248 Sed-Chr13:1639361 2.10E-20 dispersed
Sed07g0592 Sed-Chr7:4494478 Sed13g0248 Sed-Chr13:1639361 8.00E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0248 K22804 - csv:101208493 1810.42