Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0248 ATGGCTGATTCCACTGCTCTTCCTCCTCGCTGCGAAGCCGGAATCATCAGAAGTATACGCCTGGAGAATTTCATGTGTCACAGCAACTTGCACATTGAGCTTGGCGAGTGGCTCAATTTCATTACTGGCCAGAACGGAAGTGGTAAGAGTGCTATACTAACTGCTTTATGTGTTGCATTTGGCTGTCGAGCAAAAGGAACCCAAAGGGCATCCACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAATTGTTAAATAGGGGGGAGGATGCGTTTAAGCCTGAAATATATGGTAATCTTATAACCATAGAGAGAAGGATTTCCGAAGCCTCCAGTGGCATTGTTTTGAAAAATCGCCAAGGAAAAAAAGTTGCCAGTCGGAGGGATGAACTACGGGAGCTAGTAGAACATTTTAATATAGATGTTGAGAACCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATAACAAGGATAAATTTAAGTTCTTCTTCAAGGCTACTCTTCTTCAGCAAGTTGATGACCTGTTGAAAAATGTTTTTGGTCAATTGAGATCTGCAAACGCGCTTGTTGATGACTTGGAGTCTACTATACGACCTGTGGAGAAGGAACTAAATGAGCTGCGAGGAAAAATAAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTTCAACAATTAAAGAAAAAGCTTGCATGGTCATGGGTATACGATGTTGACAAACAACTTCAGGGACAAAGTACAAAAATAGGAAAGCTCAAAGATCGCATTCCTATTTGTCGGGCGAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAGCGCTTTATCGAGAAGAAGGGTCAAATTGCAAGCATGATGGAGAGAACTTCCGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAACACGGACTTGAAGAACAGCATGGCCGCAAACTGAACTACATTCAAAACATGGCAAAACGTGTTAGGCTGCTTGAGCAACAAGTTCATGATATTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGACCGAAGCTGCTAAGTCAACAGTTATGAGGTTGAAGGAGGAGGAAAATAGCTTATTGGATAGCCTACATAATGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGGTCGAAGGTTATGAGAAAAAGTATAAAGAATTTTCTCAGTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGACAGAGTCATTCAGTTATTGCGTGCGATTGAGAGACAACATCGAAGATTCAAGACACCTCCCATTGGTCCAATTGGGGCCCATCTGAATTTGGTCAATGGTGATATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACCGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGATGTTAATTATAGGCATCTCCCAATTATCATCTATGACTTTTCACGACCACTGTTAGATATTCCACCTCACATGCTTCCTCAAACAAGGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCATACTGTAATGAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGCAGGTAAATCAGTCGCATTTGACCAACGTGTCTCGAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCTCCAGTTAGAAGACCTAGAAGCGGCAGACTTTGTAGTTCTTTTGATGAACAGATTAAAAGTCTTGAAAAAGATGCATCAAATGTGAAAGAAGAAGGCGAGCAATGTAGGAAGAGGAAGAGAGCTACAGAAGAACAACTTCGGGATGTTGAAGGCAACCTAAACAATGCAAAGAGGAGATGTCAGAGTGCGGAACGATTCTTAATGTCCAAAAATTTGGAGTTACAAGATTTACGAAAATCAAAAGTTGCTGAAACTAGTTCGTTACCTGCATCAAATGTTGACGAACTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAATTCTCTTCTGGAAAAGTTTAGAGTTAGAATGAAAGAAGCGGAAGCTAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTGTGTGAGTCGGCGAAAGGAGAAGTTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGATTTGCATTCTGCAGAAAAGGAGAAGAATCATTATGAAGGTATTATGAATAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAAACAGCATCAGGAGCTTGAGCTCCATCGTAAGGAGAGCTATAATAAGGCTTCAATAATATGTCCTGAAAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCAGAACAACTCAGTGCACAATTATCGAGGCTAAATCAAAGACTTAGCAACGAGACCCGACGATGTTCTGAATCTCTGGAAGACCTGCGAATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGGCGTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCAACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAGTCAATTATGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTACTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAGATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGACGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCTTTGGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATCGGAATGGTAAAACATGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 40.84 MADSTALPPRCEAGIIRSIRLENFMCHSNLHIELGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIQVELLNRGEDAFKPEIYGNLITIERRISEASSGIVLKNRQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFFKATLLQQVDDLLKNVFGQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQGQSTKIGKLKDRIPICRAKIDHQLGLAEKLRERFIEKKGQIASMMERTSEVRRMKDELQETLSLATREKHGLEEQHGRKLNYIQNMAKRVRLLEQQVHDIHEQHIRNTQAEESEIEEKLKELESETEAAKSTVMRLKEEENSLLDSLHNGRSEIKKIAEEVEGYEKKYKEFSQSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHRRFKTPPIGPIGAHLNLVNGDMWAPAVESAIGRLLNAFIVTDHRDSLLLRGCANDVNYRHLPIIIYDFSRPLLDIPPHMLPQTRHPTTLSVIHSENHTVMNVLIDKGDAERQVLVKDYDAGKSVAFDQRVSNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDEQIKSLEKDASNVKEEGEQCRKRKRATEEQLRDVEGNLNNAKRRCQSAERFLMSKNLELQDLRKSKVAETSSLPASNVDELHQEISKIQEEIQENNSLLEKFRVRMKEAEAKAKDLKVSFENLCESAKGEVDAFEEAERDMLQIERDLHSAEKEKNHYEGIMNNKVLFDIKEAEKQHQELELHRKESYNKASIICPESEIEALGDWDGSTPEQLSAQLSRLNQRLSNETRRCSESLEDLRMMYEKKERTIIRKQQAYKSFREKLNACQKALEQRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKHGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1639361 1655306 - Sed0013674.1 Sed13g0248 733758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0248 1052 Coils Coil 802 822 - -
Sed13g0248 1052 Coils Coil 362 396 - -
Sed13g0248 1052 Coils Coil 766 786 - -
Sed13g0248 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 1042 IPR027417 -
Sed13g0248 1052 Coils Coil 203 223 - -
Sed13g0248 1052 Coils Coil 312 332 - -
Sed13g0248 1052 Coils Coil 340 360 - -
Sed13g0248 1052 Gene3D - 628 803 - -
Sed13g0248 1052 Pfam RecF/RecN/SMC N terminal domain 16 1044 IPR003395 -
Sed13g0248 1052 Gene3D - 854 1049 IPR027417 -
Sed13g0248 1052 Coils Coil 628 683 - -
Sed13g0248 1052 Coils Coil 404 438 - -
Sed13g0248 1052 Coils Coil 710 758 - -
Sed13g0248 1052 Coils Coil 900 920 - -
Sed13g0248 1052 Gene3D - 15 272 IPR027417 -
Sed13g0248 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Sed13g0248 1052 Coils Coil 868 888 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0248 K22804 - - csv:101208493 1810.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0591 Sed-Chr7:4494478 Sed13g0248 Sed-Chr13:1639361 2.10E-20 dispersed
Sed07g0592 Sed-Chr7:4494478 Sed13g0248 Sed-Chr13:1639361 8.00E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0591 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 68.2 0.0e+00 1367.8
Sed07g0592 . 2 936 Structural Maintenance of Chromosomes family AT5G15920 66.2 0.0e+00 1181.0
Sed13g0248 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 63.0 0.0e+00 1249.2
Sed13g0248 . 2 1052 Structural Maintenance of Chromosomes family AT5G61460 65.0 0.0e+00 1311.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32