Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0263 ATGACCCAGTTGCTCAATCTTGCCATTGGAGTGGTTATAGTTGCAGCTTTGGCCATTCTCCTTTTCATTTTCATGAACAGAAAGGAAAAGGGGAAAGATGAGTATAATGATATTGAGAGGAAACAAGAGAGGGAAAAGGGGGAAGAGGAGAGTGAAGAATTGGTGACTTTTCAAGGTGGAAATGAGCTTACAATTGTGGATGTTTTGGAAGCTCCTGGTGAAGTGATTGGAAAGGCTAATCATGGAACTTTGTATAAGGCTTATTTGCAAGGGAGCAGCTCAGTGAGGCTGTTGAGGTTTTTGAGACCAGTTTGTACTGCTGGGCTTGAGGATTTTGTTAGTGAGATTGAGTTTTTGGGTTCCATTAGGCACCAAAATTTGGTGCCTCTTTTGGGATTCTATTCTGGTCCTAGGGCTGAGAAGCTTCTCATTCATCCATTTTACAGGAGAGGAAATCTTTCTCAGTTCATTAGAGATGGACATGGCGACTCGCACCGATGGGCAGTTATAAACAAGATCTCGGTTGGTATAGCAAAAGGGTTGGATCATCTCCACACTGGTTTACAAAAGCCAACAATCCATGGGAATCTGCAGTCGAAAAATGTTCTTTTGGATCAAAACTACGAATCGTATGTCTCCGATTTCGGCCTACATCTACTGTTGAATGCCTCTGCTGCACAAGAAGTACTTGAAGGTTCATCAGCCAATGGCTACAAAGCTCCTGAGCTGATCAAGATGAAGGATGCAACTGAGTTGACTGACATCTATAGCTATGGTGTGATCTTGCTCGAGTTACTGTCCGGGAAGGAACCGGTCAACGAAAAGCCAACTGCTGATGAGGACTTTTACTTGCCTAACTTCATGAGAAATGCAGTTCTTGGACATAGAATTGCAGATTTGTTCCATCCAGAAATACTTCTCTATAGCAGCATTGATGGAAACAATGTTACTGAAGCAAAGATTCTCAAATTCTTTCAGCTTGCTATGGCTTGCTGTTCTCCTTCTCCAGCTCTTAGACCAAGTATGAAGCAAGTTCTTCGAAAGCTCAACGAAATCAGATCGTAA 1065 42.54 MTQLLNLAIGVVIVAALAILLFIFMNRKEKGKDEYNDIERKQEREKGEEESEELVTFQGGNELTIVDVLEAPGEVIGKANHGTLYKAYLQGSSSVRLLRFLRPVCTAGLEDFVSEIEFLGSIRHQNLVPLLGFYSGPRAEKLLIHPFYRRGNLSQFIRDGHGDSHRWAVINKISVGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDQNYESYVSDFGLHLLLNASAAQEVLEGSSANGYKAPELIKMKDATELTDIYSYGVILLELLSGKEPVNEKPTADEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNNVTEAKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIRS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1717854 1719984 - Sed0025778.1 Sed13g0263 733773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0263 354 Coils Coil 28 48 - -
Sed13g0263 354 Gene3D Phosphorylase Kinase; domain 1 40 147 - -
Sed13g0263 354 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0263 354 SUPERFAMILY Protein kinase-like (PK-like) 73 349 IPR011009 -
Sed13g0263 354 Gene3D Transferase(Phosphotransferase) domain 1 149 354 - -
Sed13g0263 354 Pfam Protein tyrosine and serine/threonine kinase 74 348 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0263 354 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 12 353 IPR052451 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0620 Sed-Chr5:4470250 Sed13g0263 Sed-Chr13:1717854 5.40E-71 dispersed
Sed07g0201 Sed-Chr7:1717943 Sed13g0263 Sed-Chr13:1717854 4.50E-56 dispersed
Sed13g0263 Sed-Chr13:1717854 Sed14g0561 Sed-Chr14:5658830 4.70E-49 dispersed
Sed13g0263 Sed-Chr13:1717854 Sed01g3728 Sed-Chr1:66358454 7.30E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80063 PF07714 PK_Tyr_Ser-Thr 2.50E-31 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0263 - - - 0.0