Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0274 ATGATGCCCACAAAATATGCAACATTTACAAAATCCACCCACGCCGAATTACAAGAACAAGAAGGTGAATATCAAACCTTCGCCGGAATTTCACGGCGGCGAGTGATCGACCCACGCCGCGCGTGGGTGCAGCGGTGGAACCGCGTGGTTCTGCTAGCGCGTGCGGCGTCTGTGGCGGTTGACCCGCTCTTCTTCTACGTCATATTTCTGACCAGCGCCGGCCGGCCGCCGTGCTTCTACCGGGACGCGGCGTTTGCGGCCGCCGTCACCGCCGCGCGCACGTGCGTGGACATGGTGCACGTGTGCCACGTGTGGATGCAGTTTCGGCTGGCGTTTGTTTCGACGGCGTCGTTGGTAGTCGGGAGTGGGGCGCTCGTGTGGGACGCACGTGCCATTGCTTCTCACTATTTGAGGTCTTTCAAAGGCTTTTGGCTCGATTTGTTTGTGATTATTCCAATTCCTCAGGTTGTGACATGGTTGATAATCCCAAAACTACTAAGGGAAGAAGAGATAAAAAAGATGATGAAATTGGTGTTAGTGAGCTACCTAATTCAGTTCCTTCCAAAGCTTTACCACAGCATTTATTTGATGAAGAAGCTACAAAAAGTGACTGGCTTTATCTTTGGAAGCATTTGGTGGCGCTTTAACCTCAATGTCTTTGCTTATTTGATTGCTTCTCATGTTGCAGGAGGATGTTGGTACCTCCTCGCGACACAACGGCTAATCTCGTGCCTCGAACAACAATGTGAGAGGAGAAAAATGTGCAAACTTGAACTGTCTTGCTCAGGCTACAAAGGGACAGGTAAATTTGGATCATCAATTTCAGGTTCTTCTTCCCATGGTAATAACTTGACAAAGATCAAGTCTTTATGCTTGGAGGTCAATGGACCATTTAGCTATGGAATTTATGAGCCTGTTCTTTTGGTATTCTCTAGCAACTCTCTAGCTGTTAGAATTCTTTATCCTATCTTCTGGGGTTTATTGAACTTGAGTTCCTTTGGCAATGAACTTAATCCCACAAGTAATTTGATGGAAGTGATTTTCAGTAGCTGCATTACACTTGGGGGATTGGTGCTGTTTGTTACCTTAATTGGAAATATACAGATTTTTTTGCAAACTGTTATGGCAAGTAAGGAAAATATGCAAATAAGGTTTAGAGATATGAAGTGGTGGATGAGGAGAAGGCAATTGCCTGTTCATTTGAGAGAAAGAGTTTGCAATTTTGAATACCAAAGGTGGGAAGCCATGGGAGGGCTCGATGAGGCCGAGCTCATCAGAGGACTGCCTGACGGCCTCCGTCGAGATATCAAACGCTACCTTTGTCTAGACCTTATTAAGAAGGTACCTTTCTTCCACATGTTGGATGATCTCATACTCGATAACATTTGTGATCGTGTTAAACCGCTCTTGTATGTTGAAGGCGAAAAGATTGTAAGGGAGGGAGACCCTGTACAAAGGATGATGTTCATAGTTGAAGGATGCGTAGAGCGTAGCCAAGGCTGCCTTAGCAACCTCGTATGCTCGAGTTTGCTAAACTCTGGTGGCTTTTTCGGTGAGGAGCTACTCTCGTGGTGTCTCCGACTCCGGCACCATCCGTATCTCGAGAAGCTTCCAACTTCTTTGGCAACATTTTCATGTGTACAGCCCGTAGAAGCATACGGCCTCGACGCACACGATCTTAGGTACATTATCAAACACTTTCGCTACAAGTTCGCAAGTGAAAAGCTCAAACAAACCATGCGCTATTACTCTTCAAATTGGCAAACATGGGGAGCTGCGATCATTCAGTTTTCATGGCGTCGCCATCAGATACGAACTCGAGGTTACACGGCACGAAACCGAACAGCTGAAAATCGAATAAGGCAGTATGCTGCAGTTTTCTTGTCGATGAAGCCTAATGATCATCTTGAGTAG 1914 46.39 MMPTKYATFTKSTHAELQEQEGEYQTFAGISRRRVIDPRRAWVQRWNRVVLLARAASVAVDPLFFYVIFLTSAGRPPCFYRDAAFAAAVTAARTCVDMVHVCHVWMQFRLAFVSTASLVVGSGALVWDARAIASHYLRSFKGFWLDLFVIIPIPQVVTWLIIPKLLREEEIKKMMKLVLVSYLIQFLPKLYHSIYLMKKLQKVTGFIFGSIWWRFNLNVFAYLIASHVAGGCWYLLATQRLISCLEQQCERRKMCKLELSCSGYKGTGKFGSSISGSSSHGNNLTKIKSLCLEVNGPFSYGIYEPVLLVFSSNSLAVRILYPIFWGLLNLSSFGNELNPTSNLMEVIFSSCITLGGLVLFVTLIGNIQIFLQTVMASKENMQIRFRDMKWWMRRRQLPVHLRERVCNFEYQRWEAMGGLDEAELIRGLPDGLRRDIKRYLCLDLIKKVPFFHMLDDLILDNICDRVKPLLYVEGEKIVREGDPVQRMMFIVEGCVERSQGCLSNLVCSSLLNSGGFFGEELLSWCLRLRHHPYLEKLPTSLATFSCVQPVEAYGLDAHDLRYIIKHFRYKFASEKLKQTMRYYSSNWQTWGAAIIQFSWRRHQIRTRGYTARNRTAENRIRQYAAVFLSMKPNDHLE 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1906762 1914951 - Sed0004368.1 Sed13g0274 733784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0274 637 Gene3D Jelly Rolls 448 569 IPR014710 -
Sed13g0274 637 SUPERFAMILY cAMP-binding domain-like 377 567 IPR018490 -
Sed13g0274 637 CDD CAP_ED 450 564 IPR000595 -
Sed13g0274 637 Gene3D Helix hairpin bin 376 441 - -
Sed13g0274 637 ProSiteProfiles cAMP/cGMP binding motif profile. 450 522 IPR000595 -
Sed13g0274 637 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 619 - -
Sed13g0274 637 SUPERFAMILY Voltage-gated potassium channels 38 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2035 Sed-Chr11:34389559 Sed13g0274 Sed-Chr13:1906762 6.50E-212 dispersed
Sed13g0274 Sed-Chr13:1906762 Sed13g2104 Sed-Chr13:25724430 2.40E-99 dispersed
Sed13g0274 Sed-Chr13:1906762 Sed12g2238 Sed-Chr12:32810980 3.70E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0274 K05391 - gmx:100810471 789.26