Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0275 | ATGTTTCAAGGATTTATTTTCGGCATAAATGACGTGTACGGCCAGGATTTCTCCGCCGTGTCGCCGCCGGAGCAAATCGACTACACGGCGGCGATGTTCAGCTCCGACGAGTTTCGAATGTTCGCCTACAAGATCCAACGGTGTCCAAGGACCTGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAATTACACCGCCGTGGCCTGCCCGGCCTTCCGTACGGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTTGCCCATGGGGTTTTCGAGTACTGGCTCCACCCGGGCCGGTACCGAACCCGGTCCTGTAATGCAGGCCGGTTCTGCCGACGGAAGGTTTGTTTTTTTGCTCACTCGCCGGATCAGCTCCGGCCCGAGTCCAAACAGAAGCTTATGTTGAATGGGAGCCGGCCGCCGCGCGCGGCGGCGGCAGGCGGTGAAGCTACTCCGGCGAGGAGGAACGGCGGCGGACGGGAAATTGGATTAATAGAGGTGTCGGATTTGGAGTTGCCGGATATTGAATGGATATCGGAATTGCTGAAGTAA | 591 | 58.71 | MFQGFIFGINDVYGQDFSAVSPPEQIDYTAAMFSSDEFRMFAYKIQRCPRTCSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEYWLHPGRYRTRSCNAGRFCRRKVCFFAHSPDQLRPESKQKLMLNGSRPPRAAAAGGEATPARRNGGGREIGLIEVSDLELPDIEWISELLK | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1917940 | 1918891 | - | Sed0020309.1 | Sed13g0275 | 733785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0275 | 196 | Gene3D | - | 73 | 147 | - | - | |
Sed13g0275 | 196 | SMART | c3hfinal6 | 112 | 135 | IPR000571 | GO:0046872(InterPro) | |
Sed13g0275 | 196 | SMART | c3hfinal6 | 77 | 103 | IPR000571 | GO:0046872(InterPro) | |
Sed13g0275 | 196 | ProSiteProfiles | Zinc finger C3H1-type profile. | 77 | 104 | IPR000571 | GO:0046872(InterPro) | |
Sed13g0275 | 196 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 81 | 102 | IPR000571 | GO:0046872(InterPro) | |
Sed13g0275 | 196 | PANTHER | UNKEMPT FAMILY MEMBER | 29 | 155 | IPR045234 | - | |
Sed13g0275 | 196 | MobiDBLite | consensus disorder prediction | 151 | 171 | - | - | |
Sed13g0275 | 196 | SUPERFAMILY | CCCH zinc finger | 76 | 107 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1796 | Sed-Chr12:29019216 | Sed13g0275 | Sed-Chr13:1917940 | 1.70E-44 | dispersed | |
Sed13g0275 | Sed-Chr13:1917940 | Sed13g1846 | Sed-Chr13:23420974 | 2.60E-41 | dispersed | |
Sed13g0275 | Sed-Chr13:1917940 | Sed07g1240 | Sed-Chr7:9231562 | 1.40E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40334 | PF00642 | zf-CCCH | 4.10E-06 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0275 | - | - | - | 0.0 |