Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0275 ATGTTTCAAGGATTTATTTTCGGCATAAATGACGTGTACGGCCAGGATTTCTCCGCCGTGTCGCCGCCGGAGCAAATCGACTACACGGCGGCGATGTTCAGCTCCGACGAGTTTCGAATGTTCGCCTACAAGATCCAACGGTGTCCAAGGACCTGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAATTACACCGCCGTGGCCTGCCCGGCCTTCCGTACGGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTTGCCCATGGGGTTTTCGAGTACTGGCTCCACCCGGGCCGGTACCGAACCCGGTCCTGTAATGCAGGCCGGTTCTGCCGACGGAAGGTTTGTTTTTTTGCTCACTCGCCGGATCAGCTCCGGCCCGAGTCCAAACAGAAGCTTATGTTGAATGGGAGCCGGCCGCCGCGCGCGGCGGCGGCAGGCGGTGAAGCTACTCCGGCGAGGAGGAACGGCGGCGGACGGGAAATTGGATTAATAGAGGTGTCGGATTTGGAGTTGCCGGATATTGAATGGATATCGGAATTGCTGAAGTAA 591 58.71 MFQGFIFGINDVYGQDFSAVSPPEQIDYTAAMFSSDEFRMFAYKIQRCPRTCSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEYWLHPGRYRTRSCNAGRFCRRKVCFFAHSPDQLRPESKQKLMLNGSRPPRAAAAGGEATPARRNGGGREIGLIEVSDLELPDIEWISELLK 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1917940 1918891 - Sed0020309.1 Sed13g0275 733785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0275 196 Gene3D - 73 147 - -
Sed13g0275 196 SMART c3hfinal6 112 135 IPR000571 GO:0046872(InterPro)
Sed13g0275 196 SMART c3hfinal6 77 103 IPR000571 GO:0046872(InterPro)
Sed13g0275 196 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872(InterPro)
Sed13g0275 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872(InterPro)
Sed13g0275 196 PANTHER UNKEMPT FAMILY MEMBER 29 155 IPR045234 -
Sed13g0275 196 MobiDBLite consensus disorder prediction 151 171 - -
Sed13g0275 196 SUPERFAMILY CCCH zinc finger 76 107 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1796 Sed-Chr12:29019216 Sed13g0275 Sed-Chr13:1917940 1.70E-44 dispersed
Sed13g0275 Sed-Chr13:1917940 Sed13g1846 Sed-Chr13:23420974 2.60E-41 dispersed
Sed13g0275 Sed-Chr13:1917940 Sed07g1240 Sed-Chr7:9231562 1.40E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40334 PF00642 zf-CCCH 4.10E-06 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0275 - - - 0.0