Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0318 | ATGGGCACCGGAACCCAGCAGCAACCGTGCCGGGAAGATGACGACGACGACCTCCAGCTCGGCCCTGCCGCCACCACAATTTCCGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGGTCTCCTTCTAGCCGCGGCGAGCAGCCGGCCGGCGACAACAACACGTTTCTTCGATTGAACAACCTTGACATCCACGGCGACGAGGCCGGGTCGCAAGGACCTGCTGCTAACGTGAAGAAAAAGAGGGGTCAGCGAGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGTCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACAACCTACAATGAGGTTGCCGATGAACTTGTTGCGGAGTTTTCTGATCCTAGCAACAGTCTCGGGGCACCGGATCAGCAACAGTACGATGAAAAAAATATCAGGAGAAGGGTATATGATGCCCTGAATGTTCTGATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGCACCAGCCTGAATGATATCGAAGAACTAAAGACAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTTGAGGAACAGTATGTAGGCCTTCAGAACTTAATACAGCGAAATGAACAGTTATTCAGTTCTGACTCTGAGAATGCTCCAAGTGGTGGCGTGTCTTTACCATTCATCCTGGTGCAGACACGACCCCATGCAACTGTTGAGATAGAAATATCAGAAGACATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAACTACGTTTTGAAGGCAATGAAGTTTTGCGACAGACCGCAATGCGATAACTCGGCACAAAATTTCACTCCAGATGCCGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCAACCCAGATCCCTCTTCTTTCAATGTCTAACACGCCTGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATTAAAGCTCGTGTCAAACACGAACATTGA | 1044 | 48.66 | MGTGTQQQPCREDDDDDLQLGPAATTISGQSVSMSGSVGSPSSRGEQPAGDNNTFLRLNNLDIHGDEAGSQGPAANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNSLGAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSDSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNSAQNFTPDAGEGSSMSGMYQPTQIPLLSMSNTPVRTPTSPPLPGIIKARVKHEH | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2168436 | 2173309 | - | Sed0012655.1 | Sed13g0318 | 733828 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0318 | 347 | Gene3D | Transcription factor DP | 179 | 313 | IPR038168 | - | |
Sed13g0318 | 347 | Coils | Coil | 189 | 223 | - | - | |
Sed13g0318 | 347 | Pfam | E2F/DP family winged-helix DNA-binding domain | 93 | 173 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Sed13g0318 | 347 | MobiDBLite | consensus disorder prediction | 23 | 59 | - | - | |
Sed13g0318 | 347 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
Sed13g0318 | 347 | CDD | DP_DD | 178 | 283 | IPR014889 | - | |
Sed13g0318 | 347 | Pfam | Transcription factor DP | 181 | 288 | IPR014889 | - | |
Sed13g0318 | 347 | SUPERFAMILY | E2F-DP heterodimerization region | 179 | 293 | IPR037241 | - | |
Sed13g0318 | 347 | FunFam | Transcription factor-like protein DPB | 179 | 306 | - | - | |
Sed13g0318 | 347 | SMART | E2F_TDP_2 | 90 | 173 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Sed13g0318 | 347 | PIRSF | Txn_factor_DP | 5 | 347 | IPR015648 | GO:0005667(InterPro)|GO:0051726(InterPro) | |
Sed13g0318 | 347 | Gene3D | - | 86 | 178 | IPR036388 | - | |
Sed13g0318 | 347 | FunFam | Transcription factor-like protein DPB | 85 | 178 | - | - | |
Sed13g0318 | 347 | PANTHER | TRANSCRIPTION FACTOR DP | 23 | 313 | IPR015648 | GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro) | |
Sed13g0318 | 347 | SMART | DP_2 | 180 | 345 | IPR014889 | - | |
Sed13g0318 | 347 | SUPERFAMILY | Winged helix DNA-binding domain | 93 | 174 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1210 | Sed-Chr7:9031077 | Sed13g0318 | Sed-Chr13:2168436 | 1.20E-112 | dispersed | |
Sed13g0318 | Sed-Chr13:2168436 | Sed07g1209 | Sed-Chr7:9031077 | 2.20E-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40337 | PF08781 | DP | 2.50E-40 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0318 | K04683 | - | csv:101216863 | 610.142 |