Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0318 ATGGGCACCGGAACCCAGCAGCAACCGTGCCGGGAAGATGACGACGACGACCTCCAGCTCGGCCCTGCCGCCACCACAATTTCCGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGGTCTCCTTCTAGCCGCGGCGAGCAGCCGGCCGGCGACAACAACACGTTTCTTCGATTGAACAACCTTGACATCCACGGCGACGAGGCCGGGTCGCAAGGACCTGCTGCTAACGTGAAGAAAAAGAGGGGTCAGCGAGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGTCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACAACCTACAATGAGGTTGCCGATGAACTTGTTGCGGAGTTTTCTGATCCTAGCAACAGTCTCGGGGCACCGGATCAGCAACAGTACGATGAAAAAAATATCAGGAGAAGGGTATATGATGCCCTGAATGTTCTGATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGCACCAGCCTGAATGATATCGAAGAACTAAAGACAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTTGAGGAACAGTATGTAGGCCTTCAGAACTTAATACAGCGAAATGAACAGTTATTCAGTTCTGACTCTGAGAATGCTCCAAGTGGTGGCGTGTCTTTACCATTCATCCTGGTGCAGACACGACCCCATGCAACTGTTGAGATAGAAATATCAGAAGACATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAACTACGTTTTGAAGGCAATGAAGTTTTGCGACAGACCGCAATGCGATAACTCGGCACAAAATTTCACTCCAGATGCCGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCAACCCAGATCCCTCTTCTTTCAATGTCTAACACGCCTGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATTAAAGCTCGTGTCAAACACGAACATTGA 1044 48.66 MGTGTQQQPCREDDDDDLQLGPAATTISGQSVSMSGSVGSPSSRGEQPAGDNNTFLRLNNLDIHGDEAGSQGPAANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNSLGAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSDSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNSAQNFTPDAGEGSSMSGMYQPTQIPLLSMSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2168436 2173309 - Sed0012655.1 Sed13g0318 733828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0318 347 Gene3D Transcription factor DP 179 313 IPR038168 -
Sed13g0318 347 Coils Coil 189 223 - -
Sed13g0318 347 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed13g0318 347 MobiDBLite consensus disorder prediction 23 59 - -
Sed13g0318 347 MobiDBLite consensus disorder prediction 1 93 - -
Sed13g0318 347 CDD DP_DD 178 283 IPR014889 -
Sed13g0318 347 Pfam Transcription factor DP 181 288 IPR014889 -
Sed13g0318 347 SUPERFAMILY E2F-DP heterodimerization region 179 293 IPR037241 -
Sed13g0318 347 FunFam Transcription factor-like protein DPB 179 306 - -
Sed13g0318 347 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed13g0318 347 PIRSF Txn_factor_DP 5 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Sed13g0318 347 Gene3D - 86 178 IPR036388 -
Sed13g0318 347 FunFam Transcription factor-like protein DPB 85 178 - -
Sed13g0318 347 PANTHER TRANSCRIPTION FACTOR DP 23 313 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Sed13g0318 347 SMART DP_2 180 345 IPR014889 -
Sed13g0318 347 SUPERFAMILY Winged helix DNA-binding domain 93 174 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1210 Sed-Chr7:9031077 Sed13g0318 Sed-Chr13:2168436 1.20E-112 dispersed
Sed13g0318 Sed-Chr13:2168436 Sed07g1209 Sed-Chr7:9031077 2.20E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40337 PF08781 DP 2.50E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0318 K04683 - csv:101216863 610.142