Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0318 ATGGGCACCGGAACCCAGCAGCAACCGTGCCGGGAAGATGACGACGACGACCTCCAGCTCGGCCCTGCCGCCACCACAATTTCCGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGGTCTCCTTCTAGCCGCGGCGAGCAGCCGGCCGGCGACAACAACACGTTTCTTCGATTGAACAACCTTGACATCCACGGCGACGAGGCCGGGTCGCAAGGACCTGCTGCTAACGTGAAGAAAAAGAGGGGTCAGCGAGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGTCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACAACCTACAATGAGGTTGCCGATGAACTTGTTGCGGAGTTTTCTGATCCTAGCAACAGTCTCGGGGCACCGGATCAGCAACAGTACGATGAAAAAAATATCAGGAGAAGGGTATATGATGCCCTGAATGTTCTGATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGCACCAGCCTGAATGATATCGAAGAACTAAAGACAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTTGAGGAACAGTATGTAGGCCTTCAGAACTTAATACAGCGAAATGAACAGTTATTCAGTTCTGACTCTGAGAATGCTCCAAGTGGTGGCGTGTCTTTACCATTCATCCTGGTGCAGACACGACCCCATGCAACTGTTGAGATAGAAATATCAGAAGACATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAACTACGTTTTGAAGGCAATGAAGTTTTGCGACAGACCGCAATGCGATAACTCGGCACAAAATTTCACTCCAGATGCCGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCAACCCAGATCCCTCTTCTTTCAATGTCTAACACGCCTGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATTAAAGCTCGTGTCAAACACGAACATTGA 1044 48.66 MGTGTQQQPCREDDDDDLQLGPAATTISGQSVSMSGSVGSPSSRGEQPAGDNNTFLRLNNLDIHGDEAGSQGPAANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNSLGAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSDSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNSAQNFTPDAGEGSSMSGMYQPTQIPLLSMSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2168436 2173309 - Sed0012655.1 Sed13g0318 733828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0318 347 Gene3D Transcription factor DP 179 313 IPR038168 -
Sed13g0318 347 Coils Coil 189 223 - -
Sed13g0318 347 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed13g0318 347 MobiDBLite consensus disorder prediction 23 59 - -
Sed13g0318 347 MobiDBLite consensus disorder prediction 1 93 - -
Sed13g0318 347 CDD DP_DD 178 283 IPR014889 -
Sed13g0318 347 Pfam Transcription factor DP 181 288 IPR014889 -
Sed13g0318 347 SUPERFAMILY E2F-DP heterodimerization region 179 293 IPR037241 -
Sed13g0318 347 FunFam Transcription factor-like protein DPB 179 306 - -
Sed13g0318 347 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed13g0318 347 PIRSF Txn_factor_DP 5 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Sed13g0318 347 Gene3D - 86 178 IPR036388 -
Sed13g0318 347 FunFam Transcription factor-like protein DPB 85 178 - -
Sed13g0318 347 PANTHER TRANSCRIPTION FACTOR DP 23 313 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Sed13g0318 347 SMART DP_2 180 345 IPR014889 -
Sed13g0318 347 SUPERFAMILY Winged helix DNA-binding domain 93 174 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0318 K04683 - - csv:101216863 610.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1210 Sed-Chr7:9031077 Sed13g0318 Sed-Chr13:2168436 1.20E-112 dispersed
Sed13g0318 Sed-Chr13:2168436 Sed07g1209 Sed-Chr7:9031077 2.20E-171 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40337 PF08781 DP 2.50E-40 No_clan Sed TF