Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0324 ATGTCGGTGATGTTGGGTTCTTCGTGTTATCTGTTGTTCGTTTTGGTTCTCGGCTTTGTTTCGTTGGTTTCTGCTAATCCTGAAGGCGATGCTTTAAATGCATTGAAGTCAAATTTACAAGATCCCAATGGCGTTCTGCAGAGTTGGGATCCTACACTTGTTAATCCATGCACATGGTTTCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCTCGTTAGTTCCACAGCTTGTTCAGCTTCAGAGTTTACAATACCTGGAGCTGTATAGTAACAATATTACTGGAGGAATTCCGGATGAGCTTGGGGAGTTGAAAACCTTGGTGAGCTTGGATCTTTACTCGAACAATTTAACTGGTTCCATACCCGTCACACTTGGCAAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCAGGAACTATTCCAGTGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAACAGCCTAACTGGAGATATTCCGGTCAATGGTTCCTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATAAACTTAACGAATCCGCTTTACATACTCCATCACCTCCATCACCTCCTTCACCAACCTCCCCATCAGGTACCACTCCCACTGGAGCTATTGCTGGCGGAGTTGCTGTTGCGGCCGCCTTACTGTTTGCTGCTCCTGCTGTTGCAGTTGCTCTGTGGCGTCGAAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAGTTGCAACTGATCATTTTAGCAACAGGCATGTTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCGGATGGGTCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTCCAAACCGAAGTGGAGATGATCAGCATGGCCGTGCATCGTAATCTGCTCCGCCTGCGAGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTAATGGAAGTGTAGCATCGTGCTTGAGAGAACGTACAGAAACACAGCCTCCACTTAGTTGGCCGAATCGAAAACGCATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATCTACATGACCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCGGCAAACATATTGCTTGACGAAGAGTTCGAAGCTGTTGTGGGTGATTTTGGGCTGGCTAAACTCATGGATTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCACCCGAGTACCTTTCGACTGGAAAGTCTTCTGAAAAGACAGATGTTTTTGGGTATGGAGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTTATGCTTCTTGATTGGGTGAAAGGACTTTTAAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAACTATCCCAACGATGAAGTCGAGCAGCTTATACAAGTAGCCTTGTTGTGTACGCAAGGCACTCCTACGGAGCGGCCGAAGATGTCGGAGGTTGTACGAATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGATGAATGGCAGAAAGAGGAGCGGTTCCATCAAGAAGTTAGTCGCCATCCCCACCCAAGCGCCACTTGGATTCTCGACTCTACCGCTGAAATGCCTCCCGATGAATTGTCCGGTCCAAGATGA 1839 46.0 MSVMLGSSCYLLFVLVLGFVSLVSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGSLVPQLVQLQSLQYLELYSNNITGGIPDELGELKTLVSLDLYSNNLTGSIPVTLGKLEKLRFLRLNNNSLSGTIPVSLTNVKSLQVLDLSYNSLTGDIPVNGSFSLFTPISFAHNKLNESALHTPSPPSPPSPTSPSGTTPTGAIAGGVAVAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNRHVLGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERTETQPPLSWPNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGNYPNDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWDEWQKEERFHQEVSRHPHPSATWILDSTAEMPPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2200440 2210022 + Sed0020956.1 Sed13g0324 733834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0324 612 MobiDBLite consensus disorder prediction 583 612 - -
Sed13g0324 612 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515(InterPro)
Sed13g0324 612 Pfam Leucine Rich Repeat 165 182 IPR001611 GO:0005515(InterPro)
Sed13g0324 612 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0324 612 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Sed13g0324 612 Pfam Protein tyrosine and serine/threonine kinase 292 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0324 612 MobiDBLite consensus disorder prediction 201 224 - -
Sed13g0324 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0324 612 SUPERFAMILY L domain-like 27 202 - -
Sed13g0324 612 SMART serkin_6 289 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0324 612 Gene3D Ribonuclease Inhibitor 25 206 IPR032675 -
Sed13g0324 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 611 - -
Sed13g0324 612 FunFam Somatic embryogenesis receptor kinase 1 258 365 - -
Sed13g0324 612 FunFam Somatic embryogenesis receptor-like kinase 1 366 583 - -
Sed13g0324 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524(InterPro)
Sed13g0324 612 SUPERFAMILY Protein kinase-like (PK-like) 268 564 IPR011009 -
Sed13g0324 612 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Sed13g0324 612 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Sed13g0324 612 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1721 Sed-Chr10:34204923 Sed13g0324 Sed-Chr13:2200440 4.50E-228 dispersed
Sed13g0324 Sed-Chr13:2200440 Sed13g0326 Sed-Chr13:2222494 2.50E-223 dispersed
Sed13g0324 Sed-Chr13:2200440 Sed13g0325 Sed-Chr13:2212165 2.20E-219 tandem
Sed10g0981 Sed-Chr10:8255490 Sed13g0324 Sed-Chr13:2200440 2.20E-47 transposed
Sed13g0324 Sed-Chr13:2200440 Sed07g1206 Sed-Chr7:9009788 8.80E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80064 PF00069 Pkinase 1.00E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0324 K13416 - csv:101216389 1028.08