Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0325 ATGTCGGTGATATTGAGATTTTGTTCTTCTTTGTGGATTATTTTGGTGTTCGGTTCTGTTTCGGGGCTCTCTGCTGATATTGAAGGAGATGCTTTGTTTGCATTGAAGTTAAGTTTACAAGATCCCAACGGCGTACTGGACAGTTGGGATTCTACTCTTAATAATCCTTGCACATGGTTCCATGTCGACTGTGACAGTGGTAATGTCACTCGAGTTAATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCATAGTTTACAGTATCTGGAGCTTTATAGTAACAATATAAGTGGAGGAATTCCGGAGGAGCTAGGGGAGTTGACCAATTTGGTTAGCTTGGATCTATATTCTAACAATTTAACTGGTCCCATACCCGTCAGACTTGGCCAGCTTAAAAAATTGCGTGTCCTGCGTCTTAACAACAACAGCTTATCGGGAACTATTCCAATGTCGTTTACTAATGTTGAATCCTTGCAAGTCCTGGATCTTTCATATAACAGCCTAAGTGGAGATATTCCTGTCAATGGTTCTTTTTCTCTTTTTACTCCTGTCAGTTTTGCTCATAATAAACTAAATGAATCTGCTGTACGTACTCCATCACCTCCTTTATCTTCTTCACCAACCTCCGCATCAGGTAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTTTTGTTTTACTGTTGGCTGCTTCTGCTTCTGCTGTTGCAGTCGCTATGTGGCGTCAGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCTGAAGAGGATCCAGAAATTCATCTTGGTCAGCTCAAGAGGTTCACTTTACGTGAACTACAAATTGCAACTGATTATTTTAGCCACGAGCATATTCTAGGTAGAGGTGGGTTTGGCAAGGTGTATAAGGGACGATTGGCTGATGGATCTCTAGTGGCAGTCAAAAGACTTAAAGAGGAACGTACCAAGGGTGGGGAGCTACAATTTCAAACAGAAGTAGAGCTGCTCAACATGGCTGTGCATCGTAATTTGCTCCGTCTTTGTGGCTTTTGTATGACACCGACCGAGCGGTTACTAGTCTTTCCATTTATGGTTAATGGAAGCATAGCATCATATTTGGGAGGACGTCCAGAAACACGGCCTCCACTTCGTTGGTCGAATCGAAAACGCATTGCATTGGGATCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAACGGCAAACATTTTGCTCGACGACGATTTTGAAGCCGTTATTTGTGATTTTGGGCTGGCTAAACTCATGAACTACAAAGATACTCACGTAATAACTGCTGTATGTGGAACACCTGGGTATATAGCGCCTGAGTATCTTTCGAATGGACAGTTTTCCGAAAAGACTGACGTTTATGGGTACGGGGTAATGCTTCTTGAACTCATAACTGGACGGAGGGCCTTTGAGCTTGCCCGGCTTGCAAATGGGGACATGTTTCCGGATTGGGTGGAAGGACTTCTAAAAGACAAGAGGCTGGAAATACTAGTCGATCCCAATCTTGCTGGAGACTATCCTGATGACGAAGTCGAGCAGCTTAGTCAACTTGCATTGTTGTGCATACAATGCGGTCCTTCGGAGCGGCCTAAGATGTCGGGGGTTGTACAGATGCTCGAGGGTGATGGTTTAGCTGAAAGATGGGATGAGTGGCAAAAAAAGGAGCGGTTCCATCAAGAAGTTGGCCGCAATTCCTTCCAGAGTACTACTTGGATTGTTGACTCTGCTGCCGAAATTTCTCCTGTTGAATTATCTGGTCCAAGATAA 1836 43.85 MSVILRFCSSLWIILVFGSVSGLSADIEGDALFALKLSLQDPNGVLDSWDSTLNNPCTWFHVDCDSGNVTRVNLGNANLSGTLVPQLGQLHSLQYLELYSNNISGGIPEELGELTNLVSLDLYSNNLTGPIPVRLGQLKKLRVLRLNNNSLSGTIPMSFTNVESLQVLDLSYNSLSGDIPVNGSFSLFTPVSFAHNKLNESAVRTPSPPLSSSPTSASGNSATGAIAGGVAAAFVLLLAASASAVAVAMWRQKKPQDHFFDVPAEEDPEIHLGQLKRFTLRELQIATDYFSHEHILGRGGFGKVYKGRLADGSLVAVKRLKEERTKGGELQFQTEVELLNMAVHRNLLRLCGFCMTPTERLLVFPFMVNGSIASYLGGRPETRPPLRWSNRKRIALGSARGLAYLHDHCDPKIIHRDVKTANILLDDDFEAVICDFGLAKLMNYKDTHVITAVCGTPGYIAPEYLSNGQFSEKTDVYGYGVMLLELITGRRAFELARLANGDMFPDWVEGLLKDKRLEILVDPNLAGDYPDDEVEQLSQLALLCIQCGPSERPKMSGVVQMLEGDGLAERWDEWQKKERFHQEVGRNSFQSTTWIVDSAAEISPVELSGPR 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2212165 2220145 + Sed0015355.1 Sed13g0325 733835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0325 611 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Sed13g0325 611 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Sed13g0325 611 FunFam Somatic embryogenesis receptor kinase 1 24 209 - -
Sed13g0325 611 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Sed13g0325 611 SUPERFAMILY L domain-like 30 201 - -
Sed13g0325 611 ProSiteProfiles Protein kinase domain profile. 290 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0325 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 611 - -
Sed13g0325 611 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Sed13g0325 611 Pfam Leucine rich repeat 140 176 IPR001611 GO:0005515(InterPro)
Sed13g0325 611 SMART serkin_6 290 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0325 611 FunFam Somatic embryogenesis receptor-like kinase 1 367 582 - -
Sed13g0325 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0325 611 SUPERFAMILY Protein kinase-like (PK-like) 269 563 IPR011009 -
Sed13g0325 611 Pfam Protein kinase domain 291 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0325 611 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Sed13g0325 611 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Sed13g0325 611 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Sed13g0325 611 Gene3D Transferase(Phosphotransferase) domain 1 367 582 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1206 Sed-Chr7:9009788 Sed13g0325 Sed-Chr13:2212165 3.30E-215 dispersed
Sed13g0325 Sed-Chr13:2212165 Sed13g0329 Sed-Chr13:2225933 3.30E-183 dispersed
Sed13g0324 Sed-Chr13:2200440 Sed13g0325 Sed-Chr13:2212165 2.20E-219 tandem
Sed13g0325 Sed-Chr13:2212165 Sed13g0326 Sed-Chr13:2222494 1.30E-219 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80065 PF00069 Pkinase 1.60E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0325 K13416 - csv:101216389 898.271