Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0326 ATGTCGGTGATGTTGGATTGTTGTTGCTGTTCTTCTTCTTCTTCTTCTTCTTCTTTGTGGATTGTTTTGGTGCTTGGTTTTGTTTCTCTCCTCTCTGCTAATATTGAAGGAGATGCTTTACATGCATTGAAGTCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATGATACTCTTGTTAATCCCTGCACATGGTTCTATGTCCACTGTGACAGTGGTAATGTCACTCGAGTTAATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCAGAGTTTACAGTATCTGGACCTTTATAGTAACAATATCAGTGGAGGAATACCAGAGGAGCTTGGGGAGTTGACAAGTTTGGAGAGCTTGGATCTAAACGCAAACAATTTAACTGGTCCCATACCCGCCAGCCTTGGGCAGCTTAAAAAACTTCGTTTTCTGCGTCTCAACAACAACAGCTTATCGGGAACTATTCCGATGTCGTTAACTAATGTTGAATCCTTGCAAGTCCTGGATTTTTCATTCAACAACCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTATTTTTACTCCTATCAGTTTTGCTCATAATAAACTTAATGAATCTGCTGTACGTACTCCGTCACCTCCTTTACCTTCTTTACCAACCTCCACATCAGGTAATAGTAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTTCCGTTTTACTGTTTGCTGCTTCTGCTGTTGCAGCTGCTATGTGGCGTTGGAAGAAACCACAGAATCGTTTCTTCGATGTACCTGCTGAAGAGGATCCCGAAGCTCATCTGGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAATTGCAACCGATCATTTTAGCAACGAACATATTCTAGGTAGAGGGGCTTTTGGCAAGGTGTATAAGGGACGGTTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATTATTAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGAGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTCATGGAAGTGTAGCATCATGTTTGAGAGGACATTCAGAAACACGGCCTCCACTTAGTTGGTCGAATCGAAAACGCATTGCTTTGGGATGTGCAAGGGGGCTGGCTTATCTACATGATCATTGTGATCCTAAGATTATTCACCGTGACGTGAAAGCTGCAAACATCTTGCTTGACGAGGAGTTCGAAGCTGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTATAAAGATACTCATGTCATAACTGAAGCACGAGGAACAATTGGGCATATAGCACCCGAGTCGATTTCAACTGGAAGGTCTTCTGAAAAGATCGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTAATAACTGGACAGAGGGCCTTAGATCTTGGCCGGCGTGCAGAAGGTGACTTGATTCCTCTATGGGTGGAAGGACTTCCAAAAGACAAGAGGGTGGAAATACTAGTCGATCCCAATCTTGCAGGAGACTATCCCGATGATGAAGTCGAGCAGCTTATTCAACTTGCCTTGTTATGCATGCGAGACACTCCTTTGGAACGGCCTAAGATGTCGGGCGTTGTACAGATGCTTGAGGGATATGGTTTAGCTGAAAGACGGGCAGAATGGCAAAAAAAGGAGCGGCTCCCTCAAGAAGTCGGCCGCGATCCCTACCCAAGTACTAGGATTGTTGACTCAGATGGTAAAACAATACCTTCTGGCGGTGATGAGTTAACCGGTCCAAGATGA 1863 44.87 MSVMLDCCCCSSSSSSSSLWIVLVLGFVSLLSANIEGDALHALKSNLQDPNGVLQSWDDTLVNPCTWFYVHCDSGNVTRVNLGNANLSGTLVPQLGQLQSLQYLDLYSNNISGGIPEELGELTSLESLDLNANNLTGPIPASLGQLKKLRFLRLNNNSLSGTIPMSLTNVESLQVLDFSFNNLTGDIPVNGSFSIFTPISFAHNKLNESAVRTPSPPLPSLPTSTSGNSSATGAIAGGVAAASVLLFAASAVAAAMWRWKKPQNRFFDVPAEEDPEAHLGQLKRFSLRELQIATDHFSNEHILGRGAFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEIISMAVHRNLLRLRGFCMTPTERVLVYPYMVHGSVASCLRGHSETRPPLSWSNRKRIALGCARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVITEARGTIGHIAPESISTGRSSEKIDVFGYGVMLLELITGQRALDLGRRAEGDLIPLWVEGLPKDKRVEILVDPNLAGDYPDDEVEQLIQLALLCMRDTPLERPKMSGVVQMLEGYGLAERRAEWQKKERLPQEVGRDPYPSTRIVDSDGKTIPSGGDELTGPR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2222494 2232263 + Sed0001857.1 Sed13g0326 733836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0326 620 SUPERFAMILY Protein kinase-like (PK-like) 281 578 IPR011009 -
Sed13g0326 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0326 620 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Sed13g0326 620 Pfam Leucine Rich Repeat 172 189 IPR001611 GO:0005515(InterPro)
Sed13g0326 620 FunFam Somatic embryogenesis receptor-like kinase 1 374 589 - -
Sed13g0326 620 Pfam Protein tyrosine and serine/threonine kinase 300 569 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0326 620 Gene3D Ribonuclease Inhibitor 33 213 IPR032675 -
Sed13g0326 620 ProSiteProfiles Protein kinase domain profile. 297 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0326 620 FunFam Somatic embryogenesis receptor kinase 1 32 217 - -
Sed13g0326 620 Pfam Leucine Rich repeats (2 copies) 99 139 IPR025875 -
Sed13g0326 620 MobiDBLite consensus disorder prediction 583 620 - -
Sed13g0326 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 582 - -
Sed13g0326 620 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Sed13g0326 620 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Sed13g0326 620 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
Sed13g0326 620 SUPERFAMILY L domain-like 37 209 - -
Sed13g0326 620 SMART serkin_6 297 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0326 620 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Sed13g0326 620 Gene3D Transferase(Phosphotransferase) domain 1 374 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0324 Sed-Chr13:2200440 Sed13g0326 Sed-Chr13:2222494 2.50E-223 dispersed
Sed13g0326 Sed-Chr13:2222494 Sed13g0329 Sed-Chr13:2225933 4.60E-249 dispersed
Sed13g0325 Sed-Chr13:2212165 Sed13g0326 Sed-Chr13:2222494 1.30E-219 tandem
Sed13g0326 Sed-Chr13:2222494 Sed13g0327 Sed-Chr13:2222494 2.40E-234 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80066 PF07714 PK_Tyr_Ser-Thr 7.40E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0326 K13416 - csv:101216389 872.463