Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0327 | ATGTCGGTGATGTTGGATTGTTGTTGCTGTTCTTCTTCTTCTTCTTCTTCTTCTTTGTGGATTGTTTTGGTGCTTGGTTTTGTTTCTCTCCTCTCTGCTAATATTGAAGGAGATGCTTTACATGCATTGAAGTCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATGATACTCTTGTTAATCCCTGCACATGGTTCTATGTCCACTGTGACAGTGGTAATGTCACTCGAGTTAATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCAGAGTTTACAGTATCTGGACCTTTATAGTAACAATATCAGTGGAGGAATACCAGAGGAGCTTGGGGAGTTGACAAGTTTGGAGAGCTTGGATCTAAACGCAAACAATTTAACTGGTCCCATACCCGCCAGCCTTGGGCAGCTTAAAAAACTTCGTTTTCTGCGTCTCAACAACAACAGCTTATCGGGAACTATTCCGATGTCGTTAACTAATGTTGAATCCTTGCAAGTCCTGGATTTTTCATTCAACAACCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTATTTTTACTCCTATCAGTTTTGCTCATAATAAACTTAATGAATCTGCTGTACGTACTCCGTCACCTCCTTTACCTTCTTTACCAACCTCCACATCAGGTAATAGTAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTTCCGTTTTACTGTTTGCTGCTTCTGCTGTTGCAGCTGCTATGTGGCGTTGGAAGAAACCACAGAATCGTTTCTTCGATGTACCTGCTGAAGAGGATCCCGAAGCTCATCTGGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAATTGCAACCGATCATTTTAGCAACGAACATATTCTAGGTAGAGGGGCTTTTGGCAAGGTGTATAAGGGACGGTTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATTATTAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGAGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTCATGGAAGTGTAGCATCATGTTTGAGAGGACATTCAGAAACACGGCCTCCACTTAGTTGGTCGAATCGAAAACGCATTGCTTTGGGATGTGCAAGGGGGCTGGCTTATCTACATGATCATTGTGATCCTAAGATTATTCACCGTGACGTGAAAGCTGCAAACATCTTGCTTGACGAGGAGTTCGAAGCTGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTATAAAGATACTCATGTCATAACTGAAGCACGAGGAACAATTGGGCATATAGCACCCGAGTCGATTTCAACTGGAAGGTCTTCTGAAAAGATCGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTAATAACTGGACAGAGGGCCTTAGATCTTGGCCGGCGTGCAGAAGGTGACTTGATTCCTCTATGGGTATGTTTTGCCTTACGTCAATACTTTTGGATGCTCTTCATTATTATTTTGGTACCTTTTAAAACAAGGAAATTGTACTGGACGTGCTTTTCTCACAAAATAATTATAAACATAGGCGAATTTTAA | 1668 | 43.05 | MSVMLDCCCCSSSSSSSSLWIVLVLGFVSLLSANIEGDALHALKSNLQDPNGVLQSWDDTLVNPCTWFYVHCDSGNVTRVNLGNANLSGTLVPQLGQLQSLQYLDLYSNNISGGIPEELGELTSLESLDLNANNLTGPIPASLGQLKKLRFLRLNNNSLSGTIPMSLTNVESLQVLDFSFNNLTGDIPVNGSFSIFTPISFAHNKLNESAVRTPSPPLPSLPTSTSGNSSATGAIAGGVAAASVLLFAASAVAAAMWRWKKPQNRFFDVPAEEDPEAHLGQLKRFSLRELQIATDHFSNEHILGRGAFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEIISMAVHRNLLRLRGFCMTPTERVLVYPYMVHGSVASCLRGHSETRPPLSWSNRKRIALGCARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVITEARGTIGHIAPESISTGRSSEKIDVFGYGVMLLELITGQRALDLGRRAEGDLIPLWVCFALRQYFWMLFIIILVPFKTRKLYWTCFSHKIIINIGEF | 555 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2222494 | 2231516 | + | Sed0001857.2 | Sed13g0327 | 733837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0327 | 555 | FunFam | Somatic embryogenesis receptor kinase 1 | 32 | 217 | - | - | |
Sed13g0327 | 555 | Pfam | Leucine Rich Repeat | 148 | 169 | IPR001611 | GO:0005515(InterPro) | |
Sed13g0327 | 555 | Pfam | Leucine Rich Repeat | 172 | 189 | IPR001611 | GO:0005515(InterPro) | |
Sed13g0327 | 555 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 420 | 432 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g0327 | 555 | SUPERFAMILY | Protein kinase-like (PK-like) | 277 | 537 | IPR011009 | - | |
Sed13g0327 | 555 | FunFam | Os07g0541700 protein | 375 | 463 | - | - | |
Sed13g0327 | 555 | Pfam | Leucine Rich repeats (2 copies) | 99 | 139 | IPR025875 | - | |
Sed13g0327 | 555 | Gene3D | Phosphorylase Kinase; domain 1 | 266 | 373 | - | - | |
Sed13g0327 | 555 | Pfam | Protein kinase domain | 298 | 500 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0327 | 555 | Gene3D | Transferase(Phosphotransferase) domain 1 | 374 | 524 | - | - | |
Sed13g0327 | 555 | ProSitePatterns | Protein kinases ATP-binding region signature. | 303 | 325 | IPR017441 | GO:0005524(InterPro) | |
Sed13g0327 | 555 | SMART | serkin_6 | 297 | 549 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0327 | 555 | Pfam | Leucine rich repeat N-terminal domain | 36 | 73 | IPR013210 | - | |
Sed13g0327 | 555 | Gene3D | Ribonuclease Inhibitor | 33 | 213 | IPR032675 | - | |
Sed13g0327 | 555 | SUPERFAMILY | L domain-like | 37 | 209 | - | - | |
Sed13g0327 | 555 | ProSiteProfiles | Protein kinase domain profile. | 297 | 555 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0327 | 555 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 17 | 508 | - | - | |
Sed13g0327 | 555 | FunFam | Somatic embryogenesis receptor kinase 1 | 266 | 373 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed13g0327 | Sed-Chr13:2222494 | Sed13g0329 | Sed-Chr13:2225933 | 3.20E-185 | dispersed | |
Sed13g0326 | Sed-Chr13:2222494 | Sed13g0327 | Sed-Chr13:2222494 | 2.40E-234 | tandem | |
Sed13g0327 | Sed-Chr13:2222494 | Sed13g0328 | Sed-Chr13:2222494 | 5.60E-230 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80067 | PF00069 | Pkinase | 2.60E-43 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0327 | K13416 | - | csv:101216389 | 744.191 |