Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0327 ATGTCGGTGATGTTGGATTGTTGTTGCTGTTCTTCTTCTTCTTCTTCTTCTTCTTTGTGGATTGTTTTGGTGCTTGGTTTTGTTTCTCTCCTCTCTGCTAATATTGAAGGAGATGCTTTACATGCATTGAAGTCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATGATACTCTTGTTAATCCCTGCACATGGTTCTATGTCCACTGTGACAGTGGTAATGTCACTCGAGTTAATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCAGAGTTTACAGTATCTGGACCTTTATAGTAACAATATCAGTGGAGGAATACCAGAGGAGCTTGGGGAGTTGACAAGTTTGGAGAGCTTGGATCTAAACGCAAACAATTTAACTGGTCCCATACCCGCCAGCCTTGGGCAGCTTAAAAAACTTCGTTTTCTGCGTCTCAACAACAACAGCTTATCGGGAACTATTCCGATGTCGTTAACTAATGTTGAATCCTTGCAAGTCCTGGATTTTTCATTCAACAACCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTATTTTTACTCCTATCAGTTTTGCTCATAATAAACTTAATGAATCTGCTGTACGTACTCCGTCACCTCCTTTACCTTCTTTACCAACCTCCACATCAGGTAATAGTAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTTCCGTTTTACTGTTTGCTGCTTCTGCTGTTGCAGCTGCTATGTGGCGTTGGAAGAAACCACAGAATCGTTTCTTCGATGTACCTGCTGAAGAGGATCCCGAAGCTCATCTGGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAATTGCAACCGATCATTTTAGCAACGAACATATTCTAGGTAGAGGGGCTTTTGGCAAGGTGTATAAGGGACGGTTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATTATTAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGAGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTCATGGAAGTGTAGCATCATGTTTGAGAGGACATTCAGAAACACGGCCTCCACTTAGTTGGTCGAATCGAAAACGCATTGCTTTGGGATGTGCAAGGGGGCTGGCTTATCTACATGATCATTGTGATCCTAAGATTATTCACCGTGACGTGAAAGCTGCAAACATCTTGCTTGACGAGGAGTTCGAAGCTGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTATAAAGATACTCATGTCATAACTGAAGCACGAGGAACAATTGGGCATATAGCACCCGAGTCGATTTCAACTGGAAGGTCTTCTGAAAAGATCGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTAATAACTGGACAGAGGGCCTTAGATCTTGGCCGGCGTGCAGAAGGTGACTTGATTCCTCTATGGGTATGTTTTGCCTTACGTCAATACTTTTGGATGCTCTTCATTATTATTTTGGTACCTTTTAAAACAAGGAAATTGTACTGGACGTGCTTTTCTCACAAAATAATTATAAACATAGGCGAATTTTAA 1668 43.05 MSVMLDCCCCSSSSSSSSLWIVLVLGFVSLLSANIEGDALHALKSNLQDPNGVLQSWDDTLVNPCTWFYVHCDSGNVTRVNLGNANLSGTLVPQLGQLQSLQYLDLYSNNISGGIPEELGELTSLESLDLNANNLTGPIPASLGQLKKLRFLRLNNNSLSGTIPMSLTNVESLQVLDFSFNNLTGDIPVNGSFSIFTPISFAHNKLNESAVRTPSPPLPSLPTSTSGNSSATGAIAGGVAAASVLLFAASAVAAAMWRWKKPQNRFFDVPAEEDPEAHLGQLKRFSLRELQIATDHFSNEHILGRGAFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEIISMAVHRNLLRLRGFCMTPTERVLVYPYMVHGSVASCLRGHSETRPPLSWSNRKRIALGCARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVITEARGTIGHIAPESISTGRSSEKIDVFGYGVMLLELITGQRALDLGRRAEGDLIPLWVCFALRQYFWMLFIIILVPFKTRKLYWTCFSHKIIINIGEF 555
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 2222494 2231516 + Sed0001857.2 Sed13g0327 733837
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0327 555 FunFam Somatic embryogenesis receptor kinase 1 32 217 - -
Sed13g0327 555 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Sed13g0327 555 Pfam Leucine Rich Repeat 172 189 IPR001611 GO:0005515(InterPro)
Sed13g0327 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0327 555 SUPERFAMILY Protein kinase-like (PK-like) 277 537 IPR011009 -
Sed13g0327 555 FunFam Os07g0541700 protein 375 463 - -
Sed13g0327 555 Pfam Leucine Rich repeats (2 copies) 99 139 IPR025875 -
Sed13g0327 555 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Sed13g0327 555 Pfam Protein kinase domain 298 500 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0327 555 Gene3D Transferase(Phosphotransferase) domain 1 374 524 - -
Sed13g0327 555 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Sed13g0327 555 SMART serkin_6 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0327 555 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Sed13g0327 555 Gene3D Ribonuclease Inhibitor 33 213 IPR032675 -
Sed13g0327 555 SUPERFAMILY L domain-like 37 209 - -
Sed13g0327 555 ProSiteProfiles Protein kinase domain profile. 297 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0327 555 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 508 - -
Sed13g0327 555 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0327 Sed-Chr13:2222494 Sed13g0329 Sed-Chr13:2225933 3.20E-185 dispersed
Sed13g0326 Sed-Chr13:2222494 Sed13g0327 Sed-Chr13:2222494 2.40E-234 tandem
Sed13g0327 Sed-Chr13:2222494 Sed13g0328 Sed-Chr13:2222494 5.60E-230 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80067 PF00069 Pkinase 2.60E-43 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0327 K13416 - csv:101216389 744.191