Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0328 ATGTCGGTGATGTTGGATTGTTGTTGCTGTTCTTCTTCTTCTTCTTCTTCTTCTTTGTGGATTGTTTTGGTGCTTGGTTTTGTTTCTCTCCTCTCTGCTAATATTGAAGGAGATGCTTTACATGCATTGAAGTCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATGATACTCTTGTTAATCCCTGCACATGGTTCTATGTCCACTGTGACAGTGGTAATGTCACTCGAGTTAATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCAGAGTTTACAGTATCTGGACCTTTATAGTAACAATATCAGTGGAGGAATACCAGAGGAGCTTGGGGAGTTGACAAGTTTGGAGAGCTTGGATCTAAACGCAAACAATTTAACTGGTCCCATACCCGCCAGCCTTGGGCAGCTTAAAAAACTTCGTTTTCTGCGTCTCAACAACAACAGCTTATCGGGAACTATTCCGATGTCGTTAACTAATGTTGAATCCTTGCAAGTCCTGGATTTTTCATTCAACAACCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTATTTTTACTCCTATCAGTTTTGCTCATAATAAACTTAATGAATCTGCTGTACGTACTCCGTCACCTCCTTTACCTTCTTTACCAACCTCCACATCAGGTAATAGTAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTTCCGTTTTACTGTTTGCTGCTTCTGCTGTTGCAGCTGCTATGTGGCGTTGGAAGAAACCACAGAATCGTTTCTTCGATGTACCTGCTGAAGAGGATCCCGAAGCTCATCTGGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAATTGCAACCGATCATTTTAGCAACGAACATATTCTAGGTAGAGGGGCTTTTGGCAAGGTGTATAAGGGACGGTTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATTATTAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGAGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTCATGGAAGTGTAGCATCATGTTTGAGAGGACATTCAGAAACACGGCCTCCACTTAGTTGGTCGAATCGAAAACGCATTGCTTTGGGATGTGCAAGGGGGCTGGCTTATCTACATGATCATTGTGATCCTAAGATTATTCACCGTGACGTGAAAGCTGCAAACATCTTGCTTGACGAGGAGTTCGAAGCTGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTATAAAGATACTCATGTCATAACTGAAGCACGAGGAACAATTGGGCATATAGCACCCGAGTCGATTTCAACTGGAAGGTCTTCTGAAAAGATCGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTAATAACTGGACAGAGGGCCTTAGATCTTGGCCGGCGTGCAGAAGGTGGAAGGACTTCCAAAAGACAAGAGGGTGGAAATACTAGTCGATCCCAATCTTGCAGGAGACTATCCCGATGA 1596 44.24 MSVMLDCCCCSSSSSSSSLWIVLVLGFVSLLSANIEGDALHALKSNLQDPNGVLQSWDDTLVNPCTWFYVHCDSGNVTRVNLGNANLSGTLVPQLGQLQSLQYLDLYSNNISGGIPEELGELTSLESLDLNANNLTGPIPASLGQLKKLRFLRLNNNSLSGTIPMSLTNVESLQVLDFSFNNLTGDIPVNGSFSIFTPISFAHNKLNESAVRTPSPPLPSLPTSTSGNSSATGAIAGGVAAASVLLFAASAVAAAMWRWKKPQNRFFDVPAEEDPEAHLGQLKRFSLRELQIATDHFSNEHILGRGAFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEIISMAVHRNLLRLRGFCMTPTERVLVYPYMVHGSVASCLRGHSETRPPLSWSNRKRIALGCARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVITEARGTIGHIAPESISTGRSSEKIDVFGYGVMLLELITGQRALDLGRRAEGGRTSKRQEGGNTSRSQSCRRLSR 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2222494 2232263 + Sed0001857.4 Sed13g0328 733838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0328 531 Pfam Protein kinase domain 298 501 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0328 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0328 531 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 507 - -
Sed13g0328 531 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
Sed13g0328 531 ProSiteProfiles Protein kinase domain profile. 297 531 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0328 531 SUPERFAMILY Protein kinase-like (PK-like) 277 501 IPR011009 -
Sed13g0328 531 FunFam Somatic embryogenesis receptor kinase 1 32 217 - -
Sed13g0328 531 SUPERFAMILY L domain-like 37 209 - -
Sed13g0328 531 SMART serkin_6 297 531 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0328 531 Pfam Leucine Rich Repeat 172 189 IPR001611 GO:0005515(InterPro)
Sed13g0328 531 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Sed13g0328 531 Pfam Leucine Rich repeats (2 copies) 99 139 IPR025875 -
Sed13g0328 531 Gene3D Ribonuclease Inhibitor 33 213 IPR032675 -
Sed13g0328 531 MobiDBLite consensus disorder prediction 504 531 - -
Sed13g0328 531 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Sed13g0328 531 FunFam Os07g0541700 protein 375 463 - -
Sed13g0328 531 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Sed13g0328 531 MobiDBLite consensus disorder prediction 513 531 - -
Sed13g0328 531 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Sed13g0328 531 Gene3D Transferase(Phosphotransferase) domain 1 374 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0328 Sed-Chr13:2222494 Sed13g0980 Sed-Chr13:7562481 1.10E-147 dispersed
Sed13g0327 Sed-Chr13:2222494 Sed13g0328 Sed-Chr13:2222494 5.60E-230 tandem
Sed13g0328 Sed-Chr13:2222494 Sed13g0329 Sed-Chr13:2225933 2.30E-180 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80068 PF00069 Pkinase 1.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0328 K13416 - csv:101216389 741.11