Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0329 ATGTCGTTAACTAATGTTGAATCCTTGCAAGTCCTGGATTTTTCATTCAACAACCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTATTTTTACTCCTATCAGTTTTGCTCATAATAAACTTAATGAATCTGCTGTACGTACTCCGTCACCTCCTTTACCTTCTTTACCAACCTCCACATCAGGTAATAGTAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTTCCGTTTTACTGTTTGCTGCTTCTGCTGTTGCAGCTGCTATGTGGCGTTGGAAGAAACCACAGAATCGTTTCTTCGATGTACCTGCTGAAGAGGATCCCGAAGCTCATCTGGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAATTGCAACCGATCATTTTAGCAACGAACATATTCTAGGTAGAGGGGCTTTTGGCAAGGTGTATAAGGGACGGTTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATTATTAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGAGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTCATGGAAGTGTAGCATCATGTTTGAGAGGACATTCAGAAACACGGCCTCCACTTAGTTGGTCGAATCGAAAACGCATTGCTTTGGGATGTGCAAGGGGGCTGGCTTATCTACATGATCATTGTGATCCTAAGATTATTCACCGTGACGTGAAAGCTGCAAACATCTTGCTTGACGAGGAGTTCGAAGCTGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTATAAAGATACTCATGTCATAACTGAAGCACGAGGAACAATTGGGCATATAGCACCCGAGTCGATTTCAACTGGAAGGTCTTCTGAAAAGATCGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTAATAACTGGACAGAGGGCCTTAGATCTTGGCCGGCGTGCAGAAGGTGACTTGATTCCTCTATGGGTGGAAGGACTTCCAAAAGACAAGAGGGTGGAAATACTAGTCGATCCCAATCTTGCAGGAGACTATCCCGATGATGAAGTCGAGCAGCTTATTCAACTTGCCTTGTTATGCATGCGAGACACTCCTTTGGAACGGCCTAAGATGTCGGGCGTTGTACAGATGCTTGAGGGATATGGTTTAGCTGAAAGACGGGCAGAATGGCAAAAAAAGGAGCGGCTCCCTCAAGAAGTCGGCCGCGATCCCTACCCAAGTACTAGGATTGTTGACTCAGATGGTAAAACAATACCTTCTGGCGGTGATGAGTTAACCGGTCCAAGATGA 1371 45.73 MSLTNVESLQVLDFSFNNLTGDIPVNGSFSIFTPISFAHNKLNESAVRTPSPPLPSLPTSTSGNSSATGAIAGGVAAASVLLFAASAVAAAMWRWKKPQNRFFDVPAEEDPEAHLGQLKRFSLRELQIATDHFSNEHILGRGAFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEIISMAVHRNLLRLRGFCMTPTERVLVYPYMVHGSVASCLRGHSETRPPLSWSNRKRIALGCARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVITEARGTIGHIAPESISTGRSSEKIDVFGYGVMLLELITGQRALDLGRRAEGDLIPLWVEGLPKDKRVEILVDPNLAGDYPDDEVEQLIQLALLCMRDTPLERPKMSGVVQMLEGYGLAERRAEWQKKERLPQEVGRDPYPSTRIVDSDGKTIPSGGDELTGPR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2225933 2232263 + Sed0001857.3 Sed13g0329 733839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0329 456 MobiDBLite consensus disorder prediction 420 456 - -
Sed13g0329 456 Gene3D Phosphorylase Kinase; domain 1 102 209 - -
Sed13g0329 456 Gene3D Ribonuclease Inhibitor 1 46 IPR032675 -
Sed13g0329 456 Pfam Protein tyrosine and serine/threonine kinase 136 405 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0329 456 Gene3D Transferase(Phosphotransferase) domain 1 210 424 - -
Sed13g0329 456 FunFam Somatic embryogenesis receptor kinase 1 102 209 - -
Sed13g0329 456 FunFam Somatic embryogenesis receptor-like kinase 1 210 425 - -
Sed13g0329 456 MobiDBLite consensus disorder prediction 46 65 - -
Sed13g0329 456 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 418 - -
Sed13g0329 456 SUPERFAMILY Protein kinase-like (PK-like) 117 414 IPR011009 -
Sed13g0329 456 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524(InterPro)
Sed13g0329 456 ProSiteProfiles Protein kinase domain profile. 133 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0329 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0329 456 SMART serkin_6 133 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0325 Sed-Chr13:2212165 Sed13g0329 Sed-Chr13:2225933 3.30E-183 dispersed
Sed13g0326 Sed-Chr13:2222494 Sed13g0329 Sed-Chr13:2225933 4.60E-249 dispersed
Sed13g0327 Sed-Chr13:2222494 Sed13g0329 Sed-Chr13:2225933 3.20E-185 dispersed
Sed13g0329 Sed-Chr13:2225933 Sed13g0980 Sed-Chr13:7562481 3.20E-146 dispersed
Sed13g0328 Sed-Chr13:2222494 Sed13g0329 Sed-Chr13:2225933 2.30E-180 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80069 PF07714 PK_Tyr_Ser-Thr 3.40E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0329 K13416 - csv:101216389 660.603