Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0336 ATGGCGGAGGGTGAATTGGAGAGGGGCGAATTCAATTGTGGCCTTGCTTCCATGGATTCCACCGAATCGCGATGGGTATTTCAGGATGAGGACCAATCGGAGATCGACGAGGAGGAGGAGGAGGAAGAGGAGAACGCTGTGCGGCATCATTTGGATTTGGAATCTGAGGAAGAAGATAATGTTGAGCAGAAATTGATTCGGACTGGCCCGAGGATTGATTCCTTCGATGTCGAAGCCCTTGAGGTCCCTGGTGCGCATAGAAATGAATACGAGGACTTCAGCGTGGGAAAGAAATTTGCTCTTGCTTTTCAGACCCTTGGGGTTGTATTTGGTGATGTTGGGACAAGCCCTATGTATACCTTTAGTGTCATGTTCAACAAAGTTCCTATCAACGAAGATGAAGATGTTATTGGGGCATTATCTCTTGTTATCTACACCTTAATCTTGATTTCACTTGTCAAGTATGTTCTTGTTGTTCTTCTGGCAAATGATGATGGTGAAGGTGGTACTTTTGCTTTGTACTCTTTGATTTGTAGACATGCCAAGGTCAGTCTTCTCCCGAATCAACTTCCTTCGGATACTCGAATATCAAGTTTTAGGTTAAAGGTGCCATCGGCTGAATTGGAAAGATCGCTGAAAATCAAGGAAAAACTTGAGGCTTCCCTGACTTTAAAGAAGCTTCTTTTGATGCTCGTTCTTGCTGGAACGTCTATGGTAATAGCTGATGGAGTTGTTACCCCAGCAATGTCAGTAATGTCAGCTGTTAGTGGACTAAAGATTGCAGTGGATGCAATCAACCAAGATGAGGCTGTGATGATCTCAGTTGCGTGTCTTATAGTTTTGTTCAGCATTCAGAAGTATGGCACTAGCAAAGTGGGACTCGTTGTTGGTCCTGCATTATTCATATGGTTTTGTACACTTGCAGGCCTTGGAATTTATAACCTTGTCATATATGATAGCAGTGTCTTGAAGGCATTTAATCCTGTTCATATTTATTATTTCTTCAAAAGAAACTCTACCAATGCATGGTATTGCCTTGGAGGTTGTCTTTTATGTGCTACAGGTTCCGAGGCAATGTTTGCAGATCTTTGCTATTTCCCTGTGCGGTCAATACAGCTTACGTTTGTGTTCCTCGTCTTGCCTTGTCTTTTCTTGGGTTATTTGGGTCAAGCTGCCTACCTTATATCAAACCACGATGGCGCTGAGCATGTTTTTTATAATTCTGTTCCCAAAAGTGCCTTCTGGCCAGTTTTTCTTATTTCTAATGTTGCTGCATTAATTGCCAGTCGGGCTATGACTACAGCTACCTTTTCGTGTATAAAACAATCAACGGCACTTGGCTGTTTTCCTCGTCTTAAGATCATTCATACATCCAGGAAATTCATGGGGCAGATCTACATCCCGGTGTTGAATTGGTTTTTGTTGGCAGTTTGCCTGGTGGTCGTCTGCTCCATATCTAGCATGTATGAGATTGGAAACGCATATGGTATTGCTGAGCTGGGAGTGATGATGATGACTACTGCTTTGGTCACCATTGTTATGCTTCTTATATGGCAGATAAATATTATCATCGTGATGGGTTTTGCGATGTTTTTTCTTGGGATAGAACTGATATTTTTCTCGTCTGTGTTATGGGGTGTGGGTGATGGAAGTTGGATCATATTGGTCTTCGCAGTGATTATGTTCTTCATTATATATATCTGGAACTATGGAAGCAAACTAAAGTATGAAACTGAAGTCAAACAAAAGCTGTCAATGGACTTAATGCGGGAACTCGGGTGCAATCTCGGGACAGTCAGAGCTCCGGGCATCGGTTTGATCTATAATGAACTAGTGAAAGGAGTTCCTGCCATATTTGGCCATTTTCTGACTACTCTTCCTGCAGTTCATTCAATGATCATATTTGTCTGTATCAAGTATGTACCAGTTCCTGTTGTGCCTCAGAGTGAGAGATTTCTTTTCCGCCGAGTCTGCCCGAAGAGCTATCACATCTTTCGCTGCATTGCCAGGTATGGTTACAAGGATGTACGAAAAGAAAATCAGCAGATATTCGAGCAGCTCTTAATAGAAAGCCTTGAGAAATTCATTCGTCGAGAAGCACAAGAAAAATCATTAGAGAGTGATGGAGATGACGATGCTGATTCCTACGAGATCCACAACTCTCGATTTCTCATAGCTCCCAATGGAAGTGTCTATTCACTTGCCATTCCTCTACTTGCTGAACTCAACGAGACTCGACGCACAACTGAAATCATCAACGTAGTAGAAGAGGTGCAGCCAATGGAATCCCAAGACCCCTCAATCCCAGATGCAGAACAATCACTTGAGAGAGAGCTTTCTTTTATACGAAAGGCGAAAGAATCCGGAGTAGTTTACCTTCTTGGTCGTGGAGATATTAGAGCAAGAAAGGATTCATGGTTTATAAAGAAGCTTGTGATCAACTACTTTTACGCGTTTTTAAGAAAGAACAGCAGGAGGGGTATTGCTAACTTGAGTGTTCCCCACACCCACCTGATACAGGTTGGTATGACATACATGGTTTAG 2544 42.57 MAEGELERGEFNCGLASMDSTESRWVFQDEDQSEIDEEEEEEEENAVRHHLDLESEEEDNVEQKLIRTGPRIDSFDVEALEVPGAHRNEYEDFSVGKKFALAFQTLGVVFGDVGTSPMYTFSVMFNKVPINEDEDVIGALSLVIYTLILISLVKYVLVVLLANDDGEGGTFALYSLICRHAKVSLLPNQLPSDTRISSFRLKVPSAELERSLKIKEKLEASLTLKKLLLMLVLAGTSMVIADGVVTPAMSVMSAVSGLKIAVDAINQDEAVMISVACLIVLFSIQKYGTSKVGLVVGPALFIWFCTLAGLGIYNLVIYDSSVLKAFNPVHIYYFFKRNSTNAWYCLGGCLLCATGSEAMFADLCYFPVRSIQLTFVFLVLPCLFLGYLGQAAYLISNHDGAEHVFYNSVPKSAFWPVFLISNVAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFLLAVCLVVVCSISSMYEIGNAYGIAELGVMMMTTALVTIVMLLIWQINIIIVMGFAMFFLGIELIFFSSVLWGVGDGSWIILVFAVIMFFIIYIWNYGSKLKYETEVKQKLSMDLMRELGCNLGTVRAPGIGLIYNELVKGVPAIFGHFLTTLPAVHSMIIFVCIKYVPVPVVPQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENQQIFEQLLIESLEKFIRREAQEKSLESDGDDDADSYEIHNSRFLIAPNGSVYSLAIPLLAELNETRRTTEIINVVEEVQPMESQDPSIPDAEQSLERELSFIRKAKESGVVYLLGRGDIRARKDSWFIKKLVINYFYAFLRKNSRRGIANLSVPHTHLIQVGMTYMV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2268690 2280222 - Sed0011887.1 Sed13g0336 733846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0336 847 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 82 847 IPR003855 GO:0000325(PANTHER)|GO:0005774(PANTHER)|GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed13g0336 847 NCBIfam potassium uptake protein 101 847 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed13g0336 847 Pfam K+ potassium transporter integral membrane domain 101 587 IPR053951 -
Sed13g0336 847 MobiDBLite consensus disorder prediction 44 60 - -
Sed13g0336 847 MobiDBLite consensus disorder prediction 22 60 - -
Sed13g0336 847 Pfam K+ potassium transporter C-terminal domain 602 845 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0001 Sed-Chr13:17885 Sed13g0336 Sed-Chr13:2268690 2.80E-257 dispersed
Sed13g0002 Sed-Chr13:17885 Sed13g0336 Sed-Chr13:2268690 7.90E-190 dispersed
Sed13g0336 Sed-Chr13:2268690 Sed13g0337 Sed-Chr13:2268690 0.00E+00 tandem
Sed13g0336 Sed-Chr13:2268690 Sed07g1195 Sed-Chr7:8942966 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0336 - - - 0.0