Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0338 ATGGATTCCATCTTCTCCGCCACAACCAACAACCTAGCCGTGTGCTGCATTTCCAAGGCCTTGAATCGGAGACTCTCCGAAATCGTTACTAGAAGATGCGTTCACGGCGGCGCCGATCGACCTCGCCGTTTCACCTGCATTTCCACCTACATCGCCCTTGGACGCTCCGGTTCTTCTTCTTCACCGTCGCTCAGAACTCTACAGGTCGTGATTCCTTCGCTGCGGCGGCGTTTGCAGTGCGTTTCGAGCTCTTCTGTCTCTTTTGCGTCTGGCGGCGGGAATGGCGGTCTCGGAGGGAAGAACGGCGGCGGAGGTCGTGGCGGCGATGGCGATTCGAATAAGTTTGTTTCTGGTAGTGCCGAGGAGGTTTCTTCACTGTTGCCTAACGTGATTGTACTGGATGTTGGAGGAATGACGTGCGGGGGATGTGCAGCTAGTGTGAAGAGAATTCTAGAAAATCAGCCACAAGTTTCGTCTGCTAGTGTGAACCTCACAACAGAGACTGCAGTGATATGGCCTGTACCTGAGGCAAAAGATTCACCTCATTGGTTGAAGCATCTGGGAGAGACGCTTGCTAATCATCTAACTCGATGTGGTTTTGCTTCTAGTCTTCGAGAGTCAGGAAGAGACAACATCTTCATGGTTTTTGAAAGGAAGATGGAAGAAAAGCACAATCGTTTAAAAAAGAGTGGTCGCAATCTTGTTTTCTCCTGGGCTCTGTGTGCTGTGTGTCTCCTCGGCCACGCTTCTCATTTCTTTGGCGCTAAGGCTTCATGGATCCATGCATTACATACTACTCAATTCCACCTATCATTGTGCTTATTTACATTACTTGGCCCTGGTCGTCAACTTATTATTGATGGTATGAAAAGTCTTGCCAAAGGAGCTCCAAACATGAACAGTTTAGTTGGTCTTGGAGCTATATCATCATTTACTGTCAGCTCATTGGCTGCCTTAATACCAAAACTTGGTTGGAAAGCTTTCTTTGAGGAACCAGTTATGTTAATAGCATTTGTATTGTTAGGAAGGAACCTGGAACAGAGAGCTAAAATTAGAGCTACGAGTGATATGACAGGACTTCTTAGTATTTTACCTTCAAAAGCTCGTCTAGTTGTTGATGGTGATACAGAACTGAGTTCAACGGTTGAAATTCCTTGTTCTAGTCTTTCAATTGGAGATGAAATTATTGTACTTCCTGGGGACCGTGTACCTGCTGATGGAATTGTTAAATCTGGTAGAAGCATTGTGGATGAGTCGAGTTTCACTGGGGAGCCATTACCTGTTACCAAGCTGCCTGGGAGCCAAGTTGCAGCAGGAACTATAAATCTTAATGGAACTCTTACAGTTGAGGTGCGTCGACCAGGAGGTGAGACTGCTATGGGAGATATTGTTCGTTTGGTAGAAGACGCTCAAAGCCAGGAAGCTCCTGTTCAACGGTTGGCTGACAAGGTTTCAGGACACTTCACTTATGGAGTAATGGCACTCTCTGCAGCAACTTTCATATTTTGGAGTCAATTTGGCTCACGCATTCTGCCTGCAGCTTTTGTTCACGGAAGTCCAGTTTCATTGGCTCTGCAGCTTTCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGCTTAGCTACGCCAACTGCAATGCTGGTTGGAACCTCATTAGGTGCAACTAAGGGGTTACTTTTGCGCGGTGGAAATATCTTAGAGCAGTTCTCAATGGTGGATACGGTCATCTTTGACAAAACAGGGACCTTGACAGTTGGGAAACCCGTTGTGACAAAGGTGTTGGCAGCTTCAAAATATGAAACGAATGCAGATTCACAGATAAGCTCGCACAGCAATCATTCAGAAAATGAGGTTCTTAAGTTTGCTGCTGCAGTGGAATCTAACACCGTTCACCCAGTTGGCAAGGCAATTGTGGAAGCTGCTCGAGCTGTTAATGGTCAGAATTTGAAGGTGGTTGAAGGAACATTCCTTGAAGAACCAGGTTCTGGTGCTGTTGCAACAGTAGAAAACAGGATAGTATCTGTTGGAACTTGGGACTGGGTTCAGAGGCAAGGAGTCGTCGCTGATCATTTTCAAGAGATGGACGATCTCAAAGCCCAATCAGTCGTTTATGTTGGAATAGACAATGTTCTTGCTGGCCGTATTTATTATGAGGATGGCATCCGGGAAGATGCTAGTTATGTTGTCGATACTTTATCTAGGCAAGGTATTAACACGTACATGTTGTCTGGGGACAAAAGGAGCAATGCTGAGTATGTCGCATCTCTTGTTGGAATTTCAAAAAAGAAGGTACGGTCTGGAGTTAAACCCCATGAAAAGAAGAAGTTCGTTAGCGAACTTCAGGAGAATCACAACATTGTAGCCATGGTTGGTGATGGAATTAACGATGCTGCTGCCTTGGCTACTGCAGATATTGGAATTGCGATGGGTGGGGGTGTCGGAGCTGCTAGTGAGGTGTCTCCCATTGTGTTAATGGGTAACAGACTCTCTCAGTTGCTTGATGCTTTGGAGCTAAGCAGATTAACCATGAAGACAGTGAAGCAAAACCTTTGGTGGGCTTTTGGATACAACATCGTTGGAATTCCAATTGCTGCGGGTGTCTTGCTTCCTATTACGGGGACGATACTCACTCCGTCCATTGCAGGTGCGCTTATGGGTCTGAGTTCTATAGGAGTTATGGCAAATTCACTTCTTTTGAGATTAAGATTTTCTCAGAACAGGCAAAAATCAAAGAAATACCAACTACCTAAGAAAAATAGCCGTTAG 2772 45.71 MDSIFSATTNNLAVCCISKALNRRLSEIVTRRCVHGGADRPRRFTCISTYIALGRSGSSSSPSLRTLQVVIPSLRRRLQCVSSSSVSFASGGGNGGLGGKNGGGGRGGDGDSNKFVSGSAEEVSSLLPNVIVLDVGGMTCGGCAASVKRILENQPQVSSASVNLTTETAVIWPVPEAKDSPHWLKHLGETLANHLTRCGFASSLRESGRDNIFMVFERKMEEKHNRLKKSGRNLVFSWALCAVCLLGHASHFFGAKASWIHALHTTQFHLSLCLFTLLGPGRQLIIDGMKSLAKGAPNMNSLVGLGAISSFTVSSLAALIPKLGWKAFFEEPVMLIAFVLLGRNLEQRAKIRATSDMTGLLSILPSKARLVVDGDTELSSTVEIPCSSLSIGDEIIVLPGDRVPADGIVKSGRSIVDESSFTGEPLPVTKLPGSQVAAGTINLNGTLTVEVRRPGGETAMGDIVRLVEDAQSQEAPVQRLADKVSGHFTYGVMALSAATFIFWSQFGSRILPAAFVHGSPVSLALQLSCSVLVIACPCALGLATPTAMLVGTSLGATKGLLLRGGNILEQFSMVDTVIFDKTGTLTVGKPVVTKVLAASKYETNADSQISSHSNHSENEVLKFAAAVESNTVHPVGKAIVEAARAVNGQNLKVVEGTFLEEPGSGAVATVENRIVSVGTWDWVQRQGVVADHFQEMDDLKAQSVVYVGIDNVLAGRIYYEDGIREDASYVVDTLSRQGINTYMLSGDKRSNAEYVASLVGISKKKVRSGVKPHEKKKFVSELQENHNIVAMVGDGINDAAALATADIGIAMGGGVGAASEVSPIVLMGNRLSQLLDALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPITGTILTPSIAGALMGLSSIGVMANSLLLRLRFSQNRQKSKKYQLPKKNSR 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2282104 2294351 - Sed0012395.1 Sed13g0338 733848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0338 923 PRINTS H+-transporting ATPase (proton pump) signature 823 848 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g0338 923 PRINTS H+-transporting ATPase (proton pump) signature 792 808 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g0338 923 NCBIfam heavy metal translocating P-type ATPase 299 901 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed13g0338 923 FunFam Copper-transporting ATPase PAA1, chloroplastic 129 204 - -
Sed13g0338 923 SUPERFAMILY HMA, heavy metal-associated domain 130 181 IPR036163 GO:0046872(InterPro)
Sed13g0338 923 CDD P-type_ATPase_HM 234 900 - -
Sed13g0338 923 MobiDBLite consensus disorder prediction 85 115 - -
Sed13g0338 923 Gene3D - 129 207 - -
Sed13g0338 923 PRINTS P-type cation-transporting ATPase superfamily signature 737 747 - -
Sed13g0338 923 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Sed13g0338 923 PRINTS P-type cation-transporting ATPase superfamily signature 792 811 - -
Sed13g0338 923 PRINTS P-type cation-transporting ATPase superfamily signature 578 592 - -
Sed13g0338 923 PRINTS P-type cation-transporting ATPase superfamily signature 815 827 - -
Sed13g0338 923 Gene3D - 589 723 IPR023299 GO:0000166(InterPro)
Sed13g0338 923 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 610 725 IPR023299 GO:0000166(InterPro)
Sed13g0338 923 SFLD C1.7: P-type atpase like 561 842 - -
Sed13g0338 923 NCBIfam copper-translocating P-type ATPase 281 902 - -
Sed13g0338 923 FunFam Copper-transporting ATPase 1, putative 350 471 - -
Sed13g0338 923 Pfam haloacid dehalogenase-like hydrolase 574 806 - -
Sed13g0338 923 Pfam Heavy-metal-associated domain 132 177 IPR006121 GO:0046872(InterPro)
Sed13g0338 923 NCBIfam HAD-IC family P-type ATPase 337 605 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g0338 923 NCBIfam HAD-IC family P-type ATPase 628 882 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g0338 923 SUPERFAMILY Calcium ATPase, transmembrane domain M 332 863 IPR023298 -
Sed13g0338 923 ProSitePatterns Hypothetical cof family signature 2. 792 814 - -
Sed13g0338 923 Gene3D - 350 471 - -
Sed13g0338 923 ProSiteProfiles Heavy-metal-associated domain profile. 129 196 IPR006121 GO:0046872(InterPro)
Sed13g0338 923 Gene3D - 569 842 IPR023214 -
Sed13g0338 923 SFLD p-type atpase 561 842 IPR044492 -
Sed13g0338 923 FunFam Copper-transporting ATPase PAA1 chloroplastic 589 723 - -
Sed13g0338 923 Pfam E1-E2 ATPase 364 557 - -
Sed13g0338 923 CDD HMA 132 200 IPR006121 GO:0046872(InterPro)
Sed13g0338 923 ProSitePatterns E1-E2 ATPases phosphorylation site. 580 586 IPR018303 -
Sed13g0338 923 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872(InterPro)
Sed13g0338 923 PANTHER ATP7, ISOFORM B 217 903 - GO:0005507(PANTHER)|GO:0016020(PANTHER)|GO:0043682(PANTHER)|GO:0055070(PANTHER)
Sed13g0338 923 SUPERFAMILY HAD-like 576 898 IPR036412 -
Sed13g0338 923 FunFam Copper-transporting ATPase PAA1 chloroplastic 708 859 - -
Sed13g0338 923 SUPERFAMILY Calcium ATPase, transduction domain A 380 467 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1797 Sed-Chr5:31554816 Sed13g0338 Sed-Chr13:2282104 7.50E-157 dispersed
Sed06g0963 Sed-Chr6:12771827 Sed13g0338 Sed-Chr13:2282104 5.30E-25 dispersed
Sed06g0964 Sed-Chr6:12774702 Sed13g0338 Sed-Chr13:2282104 6.80E-25 dispersed
Sed10g0022 Sed-Chr10:144158 Sed13g0338 Sed-Chr13:2282104 2.40E-98 dispersed
Sed13g0338 Sed-Chr13:2282104 Sed13g0340 Sed-Chr13:2282104 0.00E+00 dispersed
Sed13g0338 Sed-Chr13:2282104 Sed13g0339 Sed-Chr13:2282104 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0338 K17686 - csv:101214702 1527.3