Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0341 ATGGATTCCATCTTCTCCGCCACAACCAACAACCTAGCCGTGTGCTGCATTTCCAAGGCCTTGAATCGGAGACTCTCCGAAATCGTTACTAGAAGATGCGTTCACGGCGGCGCCGATCGACCTCGCCGTTTCACCTGCATTTCCACCTACATCGCCCTTGGACGCTCCGGTTCTTCTTCTTCACCGTCGCTCAGAACTCTACAGGTCGTGATTCCTTCGCTGCGGCGGCGTTTGCAGTGCGTTTCGAGCTCTTCTGTCTCTTTTGCGTCTGGCGGCGGGAATGGCGGTCTCGGAGGGAAGAACGGCGGCGGAGGTCGTGGCGGCGATGGCGATTCGAATAAGTTTGTTTCTGGTAGTGCCGAGGAGGTTTCTTCACTGTTGCCTAACGTGATTGTACTGGATGTTGGAGGAATGACGTGCGGGGGATGTGCAGCTAGTGTGAAGAGAATTCTAGAAAATCAGCCACAAGTTTCGTCTGCTAGTGTGAACCTCACAACAGAGACTGCAGTGATATGGCCTGTACCTGAGGCAAAAGATTCACCTCATTGGTTGAAGCATCTGGGAGAGACGCTTGCTAATCATCTAACTCGATGTGGTTTTGCTTCTAGTCTTCGAGAGTCAGGAAGAGACAACATCTTCATGGTTTTTGAAAGGAAGATGGAAGAAAAGCACAATCGTTTAAAAAAGAGTGGTCGCAATCTTGTTTTCTCCTGGGCTCTGTGTGCTGTGTGTCTCCTCGGCCACGCTTCTCATTTCTTTGGCGCTAAGGCTTCATGGATCCATGCATTACATACTACTCAATTCCACCTATCATTGTGCTTATTTACATTACTTGGCCCTGGTCGTCAACTTATTATTGATGGTATGAAAAGTCTTGCCAAAGGAGCTCCAAACATGAACAGTTTAGTTGGTCTTGGAGCTATATCATCATTTACTGTCAGCTCATTGGCTGCCTTAATACCAAAACTTGGTTGGAAAGCTTTCTTTGAGGAACCAGTTATGTTAATAGCATTTGTATTGTTAGGAAGGAACCTGGAACAGAGAGCTAAAATTAGAGCTACGAGTGATATGACAGGACTTCTTAGTATTTTACCTTCAAAAGCTCGTCTAGTTGTTGATGGTGATACAGAACTGAGTTCAACGGTTGAAATTCCTTGTTCTAGTCTTTCAATTGGAGATGAAATTATTGTACTTCCTGGGGACCGTGTACCTGCTGATGGAATTGTTAAATCTGGTAGAAGCATTGTGGATGAGTCGAGTTTCACTGGGGAGCCATTACCTGTTACCAAGCTGCCTGGGAGCCAAGTTGCAGCAGGAACTATAAATCTTAATGGAACTCTTACAGTTGAGGTGCGTCGACCAGGAGGTGAGACTGCTATGGGAGATATTGTTCGTTTGGTAGAAGACGCTCAAAGCCAGGAAGCTCCTGTTCAACGGTTGGCTGACAAGGTTTCAGGACACTTCACTTATGGAGTAATGGCACTCTCTGCAGCAACTTTCATATTTTGGAGTCAATTTGGCTCACGCATTCTGCCTGCAGCTTTTGTTCACGGAAGTCCAGTTTCATTGGCTCTGCAGCTTTCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGCTTAGCTACGCCAACTGCAATGCTGGTTGGAACCTCATTAGGTGCAACTAAGGGGTTACTTTTGCGCGGTGGAAATATCTTAGAGCAGTTCTCAATGGTGGATACGGTCATCTTTGACAAAACAGGGACCTTGACAGTTGGGAAACCCGTTGTGACAAAGGTGTTGGCAGCTTCAAAATATGAAACGAATGCAGATTCACAGTTGAGTGTGTTTCCCAAGTTATAA 1848 46.43 MDSIFSATTNNLAVCCISKALNRRLSEIVTRRCVHGGADRPRRFTCISTYIALGRSGSSSSPSLRTLQVVIPSLRRRLQCVSSSSVSFASGGGNGGLGGKNGGGGRGGDGDSNKFVSGSAEEVSSLLPNVIVLDVGGMTCGGCAASVKRILENQPQVSSASVNLTTETAVIWPVPEAKDSPHWLKHLGETLANHLTRCGFASSLRESGRDNIFMVFERKMEEKHNRLKKSGRNLVFSWALCAVCLLGHASHFFGAKASWIHALHTTQFHLSLCLFTLLGPGRQLIIDGMKSLAKGAPNMNSLVGLGAISSFTVSSLAALIPKLGWKAFFEEPVMLIAFVLLGRNLEQRAKIRATSDMTGLLSILPSKARLVVDGDTELSSTVEIPCSSLSIGDEIIVLPGDRVPADGIVKSGRSIVDESSFTGEPLPVTKLPGSQVAAGTINLNGTLTVEVRRPGGETAMGDIVRLVEDAQSQEAPVQRLADKVSGHFTYGVMALSAATFIFWSQFGSRILPAAFVHGSPVSLALQLSCSVLVIACPCALGLATPTAMLVGTSLGATKGLLLRGGNILEQFSMVDTVIFDKTGTLTVGKPVVTKVLAASKYETNADSQLSVFPKL 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2288928 2294351 - Sed0012395.4 Sed13g0341 733851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0341 615 FunFam Copper-transporting ATPase 1, putative 350 471 - -
Sed13g0341 615 SUPERFAMILY Calcium ATPase, transmembrane domain M 332 569 IPR023298 -
Sed13g0341 615 Gene3D - 350 471 - -
Sed13g0341 615 MobiDBLite consensus disorder prediction 85 115 - -
Sed13g0341 615 Pfam Heavy-metal-associated domain 132 177 IPR006121 GO:0046872(InterPro)
Sed13g0341 615 Pfam E1-E2 ATPase 363 557 - -
Sed13g0341 615 SUPERFAMILY Calcium ATPase, transduction domain A 380 467 IPR008250 -
Sed13g0341 615 Gene3D - 569 588 IPR023214 -
Sed13g0341 615 ProSiteProfiles Heavy-metal-associated domain profile. 129 196 IPR006121 GO:0046872(InterPro)
Sed13g0341 615 SUPERFAMILY HMA, heavy metal-associated domain 130 181 IPR036163 GO:0046872(InterPro)
Sed13g0341 615 PRINTS P-type cation-transporting ATPase superfamily signature 578 592 - -
Sed13g0341 615 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Sed13g0341 615 PANTHER ATP7, ISOFORM B 217 600 - GO:0005507(PANTHER)|GO:0016020(PANTHER)|GO:0043682(PANTHER)|GO:0055070(PANTHER)
Sed13g0341 615 FunFam Copper-transporting ATPase PAA1, chloroplastic 129 204 - -
Sed13g0341 615 CDD HMA 132 200 IPR006121 GO:0046872(InterPro)
Sed13g0341 615 ProSitePatterns E1-E2 ATPases phosphorylation site. 580 586 IPR018303 -
Sed13g0341 615 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872(InterPro)
Sed13g0341 615 Gene3D - 589 602 IPR023299 GO:0000166(InterPro)
Sed13g0341 615 Gene3D - 129 207 - -
Sed13g0341 615 NCBIfam HAD-IC family P-type ATPase 336 604 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0339 Sed-Chr13:2282104 Sed13g0341 Sed-Chr13:2288928 5.60E-268 dispersed
Sed13g0341 Sed-Chr13:2288928 Sed13g1909 Sed-Chr13:24038531 4.60E-116 dispersed
Sed13g0340 Sed-Chr13:2282104 Sed13g0341 Sed-Chr13:2288928 5.60E-268 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0341 K17686 - csv:101214702 1007.28