Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0344 ATGGAAAGTATAGATTGTATGGGTAACTTATGCTGCTTCAATTCTCTTTGTTCTCAGTTTTCAGGAGGACATTCGTCATTTAGCTCCGGAAAGGGCAGGGCCAATCAATGCCCTGTCAAGTATGGTTTTAGCCTAGTAAAAGGCAAAGCAAATCACCCAATGGAAGATTATCATGTTGCTAAATTTATTACATTGCATGGTTGGGAGCTCGGCCTTTTTGCTATATATGATGGACACCTAGGAGATAGCGTACCGGCCTATCTACAAAAGCATCTATTCCCCAATATACTAAAGGATGAGGAATTCTGGTCCAATCCCCATAGCTCTATCTTTAAGACGTATGAGAAGACCGACCAAGCAATACTCTCACACACTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAGTGAACGGAAAAAAATTATGGGTTGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAAGAGAGGGCAGGAAGTACAAATGTCTATTGATCACGATCCAAACTTCGAGCGGAAAAGTATCGAGGACAAAGGTGATGTTGCTAGAGTGAACGGGCAACTTGCAGTGTCTCGAGCATTTGGCGACAAGAACCTCAAAGCACACTTGCGATCTGATCCCGACATAAAGAACATCGATATTGACTGTGACACCGAGTTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGAAAAATCAAGAAGCTGTGGATATAGCAAGAAGGATCAAGGATCCCCATACGGCAGCAAAGAAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCGATCATCGTAGTTCGTTTCAAAGGGTAA 846 43.14 MESIDCMGNLCCFNSLCSQFSGGHSSFSSGKGRANQCPVKYGFSLVKGKANHPMEDYHVAKFITLHGWELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPHSSIFKTYEKTDQAILSHTPDLGRGGSTAVTAILVNGKKLWVANVGDSRAVLSKRGQEVQMSIDHDPNFERKSIEDKGDVARVNGQLAVSRAFGDKNLKAHLRSDPDIKNIDIDCDTEFLILASDGLWKVMKNQEAVDIARRIKDPHTAAKKLAAEALKRESKDDISIIVVRFKG 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2310373 2316092 + Sed0020196.2 Sed13g0344 733854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0344 281 SMART PP2C_SIG_2 51 279 IPR001932 -
Sed13g0344 281 ProSiteProfiles PPM-type phosphatase domain profile. 40 279 IPR001932 -
Sed13g0344 281 PANTHER PROTEIN PHOSPHATASE 40 277 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g0344 281 CDD PP2Cc 39 279 IPR001932 -
Sed13g0344 281 SUPERFAMILY PP2C-like 37 280 IPR036457 -
Sed13g0344 281 FunFam Probable protein phosphatase 2C 39 31 280 - -
Sed13g0344 281 Pfam Protein phosphatase 2C 50 272 IPR001932 -
Sed13g0344 281 SMART PP2C_4 36 277 IPR001932 -
Sed13g0344 281 Gene3D - 24 281 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1192 Sed-Chr7:8918298 Sed13g0344 Sed-Chr13:2310373 1.20E-40 dispersed
Sed13g0344 Sed-Chr13:2310373 Sed13g2130 Sed-Chr13:25963283 2.60E-106 dispersed
Sed13g0343 Sed-Chr13:2310373 Sed13g0344 Sed-Chr13:2310373 2.20E-161 tandem
Sed13g0344 Sed-Chr13:2310373 Sed13g0345 Sed-Chr13:2310373 3.60E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0344 K17506 - csv:101214223 468.774