Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0345 ATGGAAAGTATAGATTGTATGGGTAACTTATGCTGCTTCAATTCTCTTTGTTCTCAGTTTTCAGGAGGACATTCGTCATTTAGCTCCGGAAAGGGCAGGGCCAATCAATGCCCTGTCAAGTATGGTTTTAGCCTAGTAAAAGGCAAAGCAAATCACCCAATGGAAGATTATCATGTTGCTAAATTTATTACATTGCATGGTTGGGAGCTCGGCCTTTTTGCTATATATGATGGACACCTAGGAGATAGCGTACCGGCCTATCTACAAAAGCATCTATTCCCCAATATACTAAAGGATGAGGAATTCTGGTCCAATCCCCATAGCTCTATCTTTAAGACGTATGAGAAGACCGACCAAGCAATACTCTCACACACTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAGTGAACGGAAAAAAATTATGGGTTGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAAGAGAGGGCAGGAAGTACAAATGTCTATTGATCACGATCCAAACTTCGAGCGGAAAAGTATCGAGGACAAAGGTGGCTTTGTCTCTAACTTGCCAGGTGATGTTGCTAGAGTGAACGGGCAACTTGCAGTGTCTCGAGCATTTGGCGACAAGAACCTCAAAGCACACTTGCGATCTGATCCCGACATAAAGAACATCGATATTGACTGTGACACCGAGTTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGAAAAATCAAGAAGCTGTGGATATAGCAAGAAGGATCAAGGATCCCCATACGGCAGCAAAGAAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCGATCATCGTAGTTCGTTTCAAAGGGTAA 870 43.33 MESIDCMGNLCCFNSLCSQFSGGHSSFSSGKGRANQCPVKYGFSLVKGKANHPMEDYHVAKFITLHGWELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPHSSIFKTYEKTDQAILSHTPDLGRGGSTAVTAILVNGKKLWVANVGDSRAVLSKRGQEVQMSIDHDPNFERKSIEDKGGFVSNLPGDVARVNGQLAVSRAFGDKNLKAHLRSDPDIKNIDIDCDTEFLILASDGLWKVMKNQEAVDIARRIKDPHTAAKKLAAEALKRESKDDISIIVVRFKG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2310373 2316092 + Sed0020196.3 Sed13g0345 733855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0345 289 PANTHER PROTEIN PHOSPHATASE 40 285 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g0345 289 CDD PP2Cc 39 287 IPR001932 -
Sed13g0345 289 Gene3D - 35 289 IPR036457 -
Sed13g0345 289 FunFam Probable protein phosphatase 2C 39 31 288 - -
Sed13g0345 289 SMART PP2C_4 36 285 IPR001932 -
Sed13g0345 289 Pfam Protein phosphatase 2C 50 280 IPR001932 -
Sed13g0345 289 ProSiteProfiles PPM-type phosphatase domain profile. 40 287 IPR001932 -
Sed13g0345 289 SUPERFAMILY PP2C-like 37 288 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0343 Sed-Chr13:2310373 Sed13g0345 Sed-Chr13:2310373 1.10E-168 dispersed
Sed13g0345 Sed-Chr13:2310373 Sed13g2130 Sed-Chr13:25963283 1.30E-113 dispersed
Sed13g0344 Sed-Chr13:2310373 Sed13g0345 Sed-Chr13:2310373 3.60E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0345 K17506 - csv:101214223 491.886