Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0354 ATGGAAAGTTTTGCGCTCCAATCAGTCTCCACTACCACTTCCTTTTCCCCTTATTCCTCCATTTCTCGCATTTCCCTCTTCCATCGCTCCACACCCATCAATCATTGCCCTTCCTGTTCGTCTTATTCCAGTTTTTCTCGCTCCATTTCGCCTTTTCGATCAACCCCACCAACCCCAAAACCCCCAATTTTGGTTTCTCGACCGACCCTTTTCAATTTGAAGCTGCGTCGACCGATTTCGATGCGAGCCAGCGCCGCTCAATCGCCGGAGAATCCGCCGTCGCCGCCGAACCCACCACCGAGACTGGGAGCTAAGCCGATCCCATTTCTGATTTCGGTTGCTATTGGGCTAATTGTGCGCTTTGCCGTTCCCAAACCGGTGGAGGTTTCGGCTCAGGCGTGGCAGTTGCTGTCGATTTTCTTGTCGACGATTGCTGGTCTTGTGTTGAGTCCTTTGCCTGTCGGTGCTTGGGCGTTTATTGGCTTGACCGTGGCTGTGGTGTCCAGGACTTTGACGTTTGCGGCTGCGTTTAATGCGTTTACCAGTGAGGTGATTTGGTTGATTGTCATTTCCTTCTTTTTTGCTCGTGGGTTTGTGAAGACTGGATTGGGGGATCGAATTGCGACGTATTTTGTGAAGTGGATGGGGAAGAGTACGCTTGGTTTGTCTTATGGGTTGACGATTAGTGAGGCTTTGATTGCTCCTGCCATGCCTAGTACTACGGCTAGGGCTGGCGGTGTGTTTTTGCCCATTATTAAGTCATTGTCGCTTGCTGCTGATAGTAAACCTAATGACCCTTCTTCTAAGAAGATTGGGGCTTATCTTGTTCAGTCTCAGTTTCAGTGTGCTGGTAACTCTAGTGCCCTTTTCCTAACTGCTGCTGCTCAAAACTTGTTGTGCCTTAAATTGGCTGAAGAACTTGGTGTACAAATATCTAGCCCTTGGCTTACTTGGGCTAAGTTTGCCAGTGTTCCAGCAATCATTAGTCTCTTAGCAACTCCAGCAATCTTATACAAGCTGTTTCCTCCAGAAACCAAAAACACGCCGGAAGCCCCAGCCTTGGCTGCAAGAAGATTGGAGGCTATGGGACCCGTCACGAAAAACGAATGGGTCATGGTCGGTACCATGCTTATTGCAGTCTCTTTATGGATTGCCGGAGAGGCCCTTAAAATACCTAGTGTTGTAGCTGCAATGATTGGTTTATCTATACTCCTTACTCTGGGTGTCCTAGACTGGGATGACTGCTTATCTGAAAAGTCAGCCTGGGATACGCTAGCTTGGTTCGCAGTCCTTGTGGGCATGGCAGGCCAATTGACGACGCTCGGTCTTGTCGGTTGGATGTCGAACTCTGTAGCCCATTTGTTGAAGTCTCTCTCCCTAAGCTGGCCTGCAGCTTTTGCTATTCTTCAGGGATCTTACTTCTTGGTTCACTACCTCTTCGCTAGCCAGACCGGTCACGTCGGAGCTTTGTACTCAGCATTCCTTGCAATGCACTTGGCTGCCAAGGTGCCCGGGGTGTTGGCTGCACTGGCCTTGGCATACAACACGAATCTCTTCGGTGCTTTGACTCATTACAGCAGTGGCCAAGCTGCTGTATACTATGGAGCGGGCTATGTCGAGCTACCAGACGTATTCAAAATCGGTTTCGTGATGGCACTAGTAAATGGTACTATCTGGGCCATAGCTGGAAGCATTTGGTGGAAGATTCTTGGTCTATACTAA 1722 49.36 MESFALQSVSTTTSFSPYSSISRISLFHRSTPINHCPSCSSYSSFSRSISPFRSTPPTPKPPILVSRPTLFNLKLRRPISMRASAAQSPENPPSPPNPPPRLGAKPIPFLISVAIGLIVRFAVPKPVEVSAQAWQLLSIFLSTIAGLVLSPLPVGAWAFIGLTVAVVSRTLTFAAAFNAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWMGKSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSLAADSKPNDPSSKKIGAYLVQSQFQCAGNSSALFLTAAAQNLLCLKLAEELGVQISSPWLTWAKFASVPAIISLLATPAILYKLFPPETKNTPEAPALAARRLEAMGPVTKNEWVMVGTMLIAVSLWIAGEALKIPSVVAAMIGLSILLTLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTTLGLVGWMSNSVAHLLKSLSLSWPAAFAILQGSYFLVHYLFASQTGHVGALYSAFLAMHLAAKVPGVLAALALAYNTNLFGALTHYSSGQAAVYYGAGYVELPDVFKIGFVMALVNGTIWAIAGSIWWKILGLY 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2378489 2384185 - Sed0013372.1 Sed13g0354 733864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0354 573 Pfam Sodium:sulfate symporter transmembrane region 108 572 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed13g0354 573 NCBIfam DASS family sodium-coupled anion symporter 125 567 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed13g0354 573 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 51 573 IPR030676 GO:0005215(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3295 Sed-Chr1:61257053 Sed13g0354 Sed-Chr13:2378489 5.10E-122 transposed
Sed13g0354 Sed-Chr13:2378489 Sed07g1188 Sed-Chr7:8889269 3.90E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0354 - - - 0.0